Evidence map›Paper›PMID 26962211›Full record

ArticleJournal of experimental botany2016

The Cer-cqu gene cluster determines three key players in a β-diketone synthase polyketide pathway synthesizing aliphatics in epicuticular waxes.

Lizette M Schneider, Nikolai M Adamski, Caspar Elo Christensen, David B Stuart, Sonia Vautrin, Mats Hansson, Cristobal Uauy, Penny von Wettstein-Knowles

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
28.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 99 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Lizette M SchneiderBiology Department, Copenhagen University, Copenhagen DK-2200, Denmark Biology Department, Lund University, SW-22362 Lund, Sweden.
Nikolai M AdamskiJohn Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK.
Caspar Elo ChristensenBiology Department, Copenhagen University, Copenhagen DK-2200, Denmark.
David B StuartBiology Department, Lund University, SW-22362 Lund, Sweden.
Sonia VautrinINRA-Centre National de Ressources Génomiques Végétales, F-31326 Castanet Tolosan, France.
Mats HanssonBiology Department, Lund University, SW-22362 Lund, Sweden.
Cristobal UauyJohn Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK.ORCID 0000-0002-9814-1770
Penny von Wettstein-KnowlesBiology Department, Copenhagen University, Copenhagen DK-2200, Denmark knowles@bio.ku.dk.
University of Copenhagen · DKJohn Innes Centre · GBLund University · SELaboratoire de Recherche en Sciences Végétales · FR

Funding

Biotechnology and Biological Sciences Research Council BB/H018824/1Biotechnology and Biological Sciences Research Council BBS/E/J/000C0628
6 · The paper itself

Abstract

Aliphatic compounds on plant surfaces, called epicuticular waxes, are the first line of defense against pathogens and pests, contribute to reducing water loss and determine other important phenotypes. Aliphatics can form crystals affecting light refraction, resulting in a color change and allowing identification of mutants in their synthesis or transport. The present study discloses three such Eceriferum (cer) genes in barley - Cer-c, Cer-q and Cer-u - known to be tightly linked and functioning in a biochemical pathway forming dominating amounts of β-diketone and hydroxy-β-diketones plus some esterified alkan-2-ols. These aliphatics are present in many Triticeae as well as dicotyledons such as Eucalyptus and Dianthus. Recently developed genomic resources and mapping populations in barley defined these genes to a small region on chromosome arm 2HS. Exploiting Cer-c and -u potential functions pinpointed five candidates, of which three were missing in apparent cer-cqu triple mutants. Sequencing more than 50 independent mutants for each gene confirmed their identification. Cer-c is a chalcone synthase-like polyketide synthase, designated diketone synthase (DKS), Cer-q is a lipase/carboxyl transferase and Cer-u is a P450 enzyme. All were highly expressed in pertinent leaf sheath tissue of wild type. A physical map revealed the order Cer-c, Cer-u, Cer-q with the flanking genes 101kb apart, confirming they are a gene cluster, Cer-cqu. Homology-based modeling suggests that many of the mutant alleles affect overall protein structure or specific active site residues. The rich diversity of identified mutations will facilitate future studies of three key enzymes involved in synthesis of plant apoplast waxes.

Indexed as

BarleycarboxylesteraseCer-cqu gene clustercytochrome P450diketone synthase (DKS)epicuticular waxesterified alkan-2-olsHordeum vulgarehydroxy-β-diketoneslipaseplant apoplasttype III polyketide synthase (PKS).β-diketone aliphatics

Identifiers

PMID26962211
PMCPMC4861019
OpenAlexW2297987532

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.