Evidence map›Paper›PMID 26962209›Full record

ArticleJournal of experimental botany2016

Phosphorylation of plastoglobular proteins in Arabidopsis thaliana.

Jens N Lohscheider, Giulia Friso, Klaas J van Wijk

Abstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Bean and Pea Plastoglobules Change in Response to Chilling Stress.International journal of molecular sciences · 2021
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jens N LohscheiderSection of Plant Biology, School of Integrated Plant Science (SIPS), Cornell University, Ithaca, NY 14853, USA.
Giulia FrisoSection of Plant Biology, School of Integrated Plant Science (SIPS), Cornell University, Ithaca, NY 14853, USA.
Klaas J van WijkSection of Plant Biology, School of Integrated Plant Science (SIPS), Cornell University, Ithaca, NY 14853, USA kv35@cornell.edu.ORCID 0000-0001-9536-0487

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plastoglobules (PGs) are plastid lipid-protein particles with a small specialized proteome and metabolome. Among the 30 core PG proteins are six proteins of the ancient ABC1 atypical kinase (ABC1K) family and their locations in an Arabidopsis mRNA-based co-expression network suggested central regulatory roles. To identify candidate ABC1K targets and a possible ABC1K hierarchical phosphorylation network within the chloroplast PG proteome, we searched Arabidopsis phosphoproteomics data from publicly available sources. Evaluation of underlying spectra and/or associated information was challenging for a variety of reasons, but supported pSer sites and a few pThr sites in nine PG proteins, including five FIBRILLINS. PG phosphorylation motifs are discussed in the context of possible responsible kinases. The challenges of collection and evaluation of published Arabidopsis phosphorylation data are discussed, illustrating the importance of deposition of all mass spectrometry data in well-organized repositories such as PRIDE and ProteomeXchange. This study provides a starting point for experimental testing of phosho-sites in PG proteins and also suggests that phosphoproteomics studies specifically designed toward the PG proteome and its ABC1K are needed to understand phosphorylation networks in these specialized particles.

Indexed as

ArabidopsisArabidopsis ProteinsChloroplastsPhosphorylationProtein KinasesProteomeArabidopsis ProteinsProtein KinasesProteomeABC1 kinasechloroplastFIBRILLINmeta-analysisphosphorylationplastoglobuleproteome.

Identifiers

PMID26962209
PMCPMC4915526

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.