Evidence map›Paper›PMID 26961879›Full record

ArticleThe Journal of biological chemistry2016

Molecular Basis and Consequences of the Cytochrome c-tRNA Interaction.

Cuiping Liu, Aaron J Stonestrom, Thomas Christian, Jeongsik Yong, Ryuichi Takase, Ya-Ming Hou, Xiaolu Yang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Genes near tRNAs are enriched in translational machinery.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Cuiping LiuFrom the Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, Pennsylvania 19107.
Aaron J Stonestromthe Department of Cancer Biology and Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and.
Thomas ChristianFrom the Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, Pennsylvania 19107.
Jeongsik Yongthe Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455.
Ryuichi TakaseFrom the Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, Pennsylvania 19107.
Ya-Ming HouFrom the Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, Pennsylvania 19107, ya-ming.hou@jefferson.edu.
Xiaolu Yangthe Department of Cancer Biology and Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, and xyang@mail.med.upenn.edu.
Thomas Jefferson University · USUniversity of Minnesota · USUniversity of Pennsylvania · USUPMC Hillman Cancer Center · US

Funding

REGULATION OF CASPASESR01GM060911 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI YANG, XIAOLU · 2000 to 2013
$2.5M
AdoMet-dependent tRNA methyl transferasesR01GM114343 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI HOU, YA-MING · 2015 to 2018
$1.3M
FUNCTIONS OF tRNA MODIFICATIONSR01GM081601 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI HOU, YA-MING · 2008 to 2011
$1.3M
Probes for a tRNA modification enzymeU01GM108972 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI HOU, YA-MING · 2015 to 2016
$603k
The interaction between tRNA and cytochrome c in apoptosis of cancer cellsR21CA178581 · NCI · UNIVERSITY OF PENNSYLVANIA · PI YANG, XIAOLU · 2014 to 2015
$383k
NCI NIH HHS R21 CA178581NIGMS NIH HHS R01 GM060911NIGMS NIH HHS R01 GM081601NIGMS NIH HHS R01 GM114343NIGMS NIH HHS U01 GM108972
6 · The paper itself

Abstract

The intrinsic apoptosis pathway occurs through the release of mitochondrial cytochrome c to the cytosol, where it promotes activation of the caspase family of proteases. The observation that tRNA binds to cytochrome c revealed a previously unexpected mode of apoptotic regulation. However, the molecular characteristics of this interaction, and its impact on each interaction partner, are not well understood. Using a novel fluorescence assay, we show here that cytochrome c binds to tRNA with an affinity comparable with other tRNA-protein binding interactions and with a molecular ratio of ∼3:1. Cytochrome c recognizes the tertiary structural features of tRNA, particularly in the core region. This binding is independent of the charging state of tRNA but is regulated by the redox state of cytochrome c. Compared with reduced cytochrome c, oxidized cytochrome c binds to tRNA with a weaker affinity, which correlates with its stronger pro-apoptotic activity. tRNA binding both facilitates cytochrome c reduction and inhibits the peroxidase activity of cytochrome c, which is involved in its release from mitochondria. Together, these findings provide new insights into the cytochrome c-tRNA interaction and apoptotic regulation.

Indexed as

AnimalsApoptosisCattleCytochromes cHumansProtein BindingProtein Structure, QuaternaryRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCytochromes cRNA, TransferSaccharomyces cerevisiae Proteinsapoptosiscaspasecytochrome cmitochondrial apoptosistransfer RNA (tRNA)

Identifiers

PMID26961879
PMCPMC4858987
OpenAlexW2295446001

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.