Evidence map›Paper›PMID 26961773›Full record

ArticleJournal of neuro-oncology2016

Tumor DNA in cerebral spinal fluid reflects clinical course in a patient with melanoma leptomeningeal brain metastases.

Yingmei Li, Wenying Pan, Ian D Connolly, Sunil Reddy, Seema Nagpal, Stephen Quake, Melanie Hayden Gephart

Abstract readCase Reports
In one paragraph

Article in Journal of neuro-oncology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 3 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 3 syntheses or guidelines pooled it, 98 citations in OpenAlex.

  1. Pooled it
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  15. The coming of age of liquid biopsy in neuro-oncology.Brain : a journal of neurology · 2023
    Article
  16. Review
  17. Phase I Study and Cell-Free DNA Analysis of T-DM1 and Metronomic Temozolomide for Secondary Prevention of HER2-Positive Breast Cancer Brain Metastases.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  18. Review
  19. Article
  20. Circulating tumour DNA - looking beyond the blood.Nature reviews. Clinical oncology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yingmei LiDepartment of Neurosurgery, Stanford University, MSLS, 1201 Welch Rd, P151, Stanford, CA, 94305-5487, USA.
Wenying PanDepartment of Bioengineering, James H. Clark Center, Stanford University, 318 Campus Drive, E300, Stanford, CA, 94305-5487, USA.
Ian D ConnollyDepartment of Neurosurgery, Stanford University, MSLS, 1201 Welch Rd, P151, Stanford, CA, 94305-5487, USA.
Sunil ReddyDepartment of Medicine, Cancer Center, Stanford University, 875 Blake Wilbur Dr, CC2232, Stanford, CA, 94305-5487, USA.
Seema NagpalDepartment of Neurology, Cancer Center, Stanford University, 875 Blake Wilbur Dr, CC2221, Stanford, CA, 94305-5487, USA.
Stephen QuakeDepartment of Bioengineering, James H. Clark Center, Stanford University, 318 Campus Drive, E300, Stanford, CA, 94305-5487, USA. quake@stanford.edu.
Melanie Hayden GephartDepartment of Neurosurgery, Stanford University, MSLS, 1205 Welch Rd, R307, Stanford, CA, 94305-5487, USA. mghayden@stanford.edu.
Stanford University · US

Funding

Tumor DNA in CSF and novel modeling decode breast cancer - brain metastasesK08NS091527 · NINDS · STANFORD UNIVERSITY · PI HAYDEN GEPHART, MELANIE · 2016 to 2020
$928k
Cell-free tumor DNA in cerebral spinal fluid decodes tumors of the central nervous systemR21CA193046 · NCI · STANFORD UNIVERSITY · PI HAYDEN GEPHART, MELANIE, QUAKE, STEPHEN R · 2015 to 2017
$666k
Howard Hughes Medical InstituteNCI NIH HHS R21 CA193046NINDS NIH HHS K08 NS091527
6 · The paper itself

Abstract

Cerebral spinal fluid (CSF) from brain tumor patients contains tumor cellular and cell-free DNA (cfDNA), which provides a less-invasive and routinely accessible method to obtain tumor genomic information. In this report, we used droplet digital PCR to test mutant tumor DNA in CSF of a patient to monitor the treatment response of metastatic melanoma leptomeningeal disease (LMD). The primary melanoma was known to have a BRAF (V600E) mutation, and the patient was treated with whole brain radiotherapy and BRAF inhibitors. We collected 9 CSF samples over 6 months. The mutant cfDNA fraction gradually decreased from 53 % (time of diagnosis) to 0 (time of symptom alleviation) over the first 6 time points. Three months after clinical improvement, the patient returned with severe symptoms and the mutant cfDNA was again detected in CSF at high levels. The mutant DNA fraction corresponded well with the patient's clinical response. We used whole exome sequencing to examine the mutation profiles of the LMD tumor DNA in CSF before therapeutic response and after disease relapse, and discovered a canonical cancer mutation PTEN (R130*) at both time points. The cellular and cfDNA revealed similar mutation profiles, suggesting cfDNA is representative of LMD cells. This study demonstrates the potential of using cellular or cfDNA in CSF to monitor treatment response for LMD.

Indexed as

Brain NeoplasmsDisease ProgressionDNA, NeoplasmHumansMaleMelanomaMeningeal NeoplasmsMiddle AgedProto-Oncogene Proteins B-rafPTEN PhosphohydrolaseBRAF protein, humanDNA, NeoplasmProto-Oncogene Proteins B-rafPTEN PhosphohydrolasePTEN protein, humanBrain TumorCell-free DNACerebral spinal fluidDroplet digital PCRExome sequencingLeptomeningeal diseaseMelanoma

Identifiers

PMID26961773
PMCPMC5412509
OpenAlexW2296405075

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.