Evidence map›Paper›PMID 26960127›Full record

ArticleActa crystallographica. Section D, Structural biology2016

Data collection with a tailored X-ray beam size at 2.69 Å wavelength (4.6 keV): sulfur SAD phasing of Cdc23(Nterm).

Michele Cianci, Matthew R Groves, David Barford, Thomas R Schneider

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Current research in structural biology · 2021
    Article
  2. Article
  3. Long-wavelength Mesh&Collect native SAD phasing from microcrystals.Acta crystallographica. Section D, Structural biology · 2019
    Article
  4. Long-wavelength macromolecular crystallography - First successful native SAD experiment close to the sulfur edge.Nuclear instruments & methods in physics research. Section B, Beam interactions with materials and atoms · 2017
    Article
  5. The hidden treasure in your data: phasing with unexpected weak anomalous scatterers from routine data sets.Acta crystallographica. Section F, Structural biology communications · 2017
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Michele CianciEMBL, Notkestrasse 85, 22607 Hamburg, Germany.
Matthew R GrovesStructural Biology Unit, Department of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands.
David BarfordDivision of Structural Biology, Institute of Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, England.
Thomas R SchneiderEMBL, Notkestrasse 85, 22607 Hamburg, Germany.

Funding

Medical Research Council MC_UP_1201/6
6 · The paper itself

Abstract

The capability to reach wavelengths of up to 3.1 Å at the newly established EMBL P13 beamline at PETRA III, the new third-generation synchrotron at DESY in Hamburg, provides the opportunity to explore very long wavelengths to harness the sulfur anomalous signal for phase determination. Data collection at λ = 2.69 Å (4.6 keV) allowed the crystal structure determination by sulfur SAD phasing of Cdc23(Nterm), a subunit of the multimeric anaphase-promoting complex (APC/C). At this energy, Cdc23(Nterm) has an expected Bijvoet ratio〈|Fanom|〉/〈F〉of 2.2%, with 282 residues, including six cysteines and five methionine residues, and two molecules in the asymmetric unit (65.4 kDa; 12 Cys and ten Met residues). Selectively illuminating two separate portions of the same crystal with an X-ray beam of 50 µm in diameter allowed crystal twinning to be overcome. The crystals diffracted to 3.1 Å resolution, with unit-cell parameters a = b = 61.2, c = 151.5 Å, and belonged to space group P43. The refined structure to 3.1 Å resolution has an R factor of 18.7% and an Rfree of 25.9%. This paper reports the structure solution, related methods and a discussion of the instrumentation.

Indexed as

Anaphase-Promoting Complex-CyclosomeCell Cycle ProteinsCrystallography, X-RayMinichromosome Maintenance ProteinsModels, MolecularProtein ConformationSchizosaccharomycesSchizosaccharomyces pombe ProteinsSulfurX-RaysAnaphase-Promoting Complex-Cyclosomecdc23 protein, S pombeCell Cycle ProteinsMinichromosome Maintenance ProteinsSchizosaccharomyces pombe ProteinsSulfurlong wavelengthlow resolutionSAD phasingsoft X-rayssulfur

Identifiers

PMID26960127
PMCPMC4784671

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.