Evidence map›Paper›PMID 26958888›Full record

ArticleBiophysical journal2016

Calculating Transition Energy Barriers and Characterizing Activation States for Steps of Fusion.

Rolf J Ryham, Thomas S Klotz, Lihan Yao, Fredric S Cohen

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 84 citations in OpenAlex.

  1. Biophysical Considerations in Cell Fusion.Advances in experimental medicine and biology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. SARS-CoV-2 FP1 Destabilizes Lipid Membranes and Facilitates Pore Formation.International journal of molecular sciences · 2025
    Article
  6. Boosting Lipofection Efficiency Through Enhanced Membrane Fusion Mechanisms.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Article
  9. Membrane fission via transmembrane contact.Nature communications · 2024
    Article
  10. Role of Interaction Range and Buoyancy on the Adhesion of Vesicles.Langmuir : the ACS journal of surfaces and colloids · 2024
    Article
  11. Synaptophysin chaperones the assembly of 12 SNAREpins under each ready-release vesicle.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Rolf J RyhamDepartment of Mathematics, Fordham University, Bronx, New York. Electronic address: rryham@fordham.edu.
Thomas S KlotzDepartment of Computational and Applied Mathematics, Rice University, Houston, Texas.
Lihan YaoDepartment of Mathematics, Fordham University, Bronx, New York.
Fredric S CohenDepartment of Molecular Biophysics and Physiology, Rush University, Chicago, Illinois.
Fordham University · USRice University · USRush University · US

Funding

Molecular Regulation of Fusion: Voltage Dependence and Local Physical InteractionR01GM101539 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI COHEN, FREDRIC S · 2013 to 2016
$1.4M
NIGMS NIH HHS R01 GM101539NIGMS NIH HHS R01-GM101539
6 · The paper itself

Abstract

We use continuum mechanics to calculate an entire least energy pathway of membrane fusion, from stalk formation, to pore creation, and through fusion pore enlargement. The model assumes that each structure in the pathway is axially symmetric. The static continuum stalk structure agrees quantitatively with experimental stalk architecture. Calculations show that in a stalk, the distal monolayer is stretched and the stored stretching energy is significantly less than the tilt energy of an unstretched distal monolayer. The string method is used to determine the energy of the transition barriers that separate intermediate states and the dynamics of two bilayers as they pass through them. Hemifusion requires a small amount of energy independently of lipid composition, while direct transition from a stalk to a fusion pore without a hemifusion intermediate is highly improbable. Hemifusion diaphragm expansion is spontaneous for distal monolayers containing at least two lipid components, given sufficiently negative diaphragm spontaneous curvature. Conversely, diaphragms formed from single-component distal monolayers do not expand without the continual injection of energy. We identify a diaphragm radius, below which central pore expansion is spontaneous. For larger diaphragms, prior studies have shown that pore expansion is not axisymmetric, and here our calculations supply an upper bound for the energy of the barrier against pore formation. The major energy-requiring deformations in the steps of fusion are: widening of a hydrophobic fissure in bilayers for stalk formation, splay within the expanding hemifusion diaphragm, and fissure widening initiating pore formation in a hemifusion diaphragm.

Indexed as

Membrane FusionHydrophobic and Hydrophilic InteractionsLipid BilayersPorosityThermodynamicsLipid Bilayers

Identifiers

PMID26958888
PMCPMC4788739
OpenAlexW2299388482

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.