Evidence map›Paper›PMID 26958841›Full record

ArticlePloS one2016

Prostate Cancer Associated Lipid Signatures in Serum Studied by ESI-Tandem Mass Spectrometryas Potential New Biomarkers.

Divya Duscharla, Sudarshana Reddy Bhumireddy, Sridhar Lakshetti, Heike Pospisil, P V L N Murthy, Reinhard Walther, Prabhakar Sripadi, Ramesh Ummanni

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Reliable identification of prostate cancer using mass spectrometry metabolomic imaging in needle core biopsies.Laboratory investigation; a journal of technical methods and pathology · 2019
    Article
  8. Biofluid lipidome: a source for potential diagnostic biomarkers.Clinical and translational medicine · 2017
    Review
  9. Advances in Lipidomics for Cancer Biomarkers Discovery.International journal of molecular sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Divya DuscharlaCenter for Chemical Biology, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, India.
Sudarshana Reddy BhumireddyCentre for Academy of Scientific & Innovative Research, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, India.
Sridhar LakshettiNational Centre for Mass Spectrometry, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, India.
Heike PospisilHigh Performance Computing in Life Sciences, Technical University, Wildau, Germany.
P V L N MurthyDepartment of Urology, Nizam's Institute of Medical Sciences (NIMS), Hyderabad, India.
Reinhard WaltherDepartment of Medical Biochemistry and Molecular Biology, University of Greifswald, Greifswald, Germany.
Prabhakar SripadiCentre for Academy of Scientific & Innovative Research, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, India.
Ramesh UmmanniCenter for Chemical Biology, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, India.
Indian Institute of Chemical Technology · INAcademy of Scientific and Innovative Research · INNizam's Institute of Medical Sciences · INTechnical University of Applied Sciences Wildau · DEUniversität Greifswald · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prostate cancer (PCa) is one amongst the most common cancersin western men. Incidence rate ofPCa is on the rise worldwide. The present study deals with theserum lipidome profiling of patients diagnosed with PCa to identify potential new biomarkers. We employed ESI-MS/MS and GC-MS for identification of significantly altered lipids in cancer patient's serum compared to controls. Lipidomic data revealed 24 lipids are significantly altered in cancer patinet's serum (n = 18) compared to normal (n = 18) with no history of PCa. By using hierarchical clustering and principal component analysis (PCA) we could clearly separate cancer patients from control group. Correlation and partition analysis along with Formal Concept Analysis (FCA) have identified that PC (39:6) and FA (22:3) could classify samples with higher certainty. Both the lipids, PC (39:6) and FA (22:3) could influence the cataloging of patients with 100% sensitivity (all 18 control samples are classified correctly) and 77.7% specificity (of 18 tumor samples 4 samples are misclassified) with p-value of 1.612×10-6 in Fischer's exact test. Further, we performed GC-MS to denote fatty acids altered in PCa patients and found that alpha-linolenic acid (ALA) levels are altered in PCa. We also performed an in vitro proliferation assay to determine the effect of ALA in survival of classical human PCa cell lines LNCaP and PC3. We hereby report that the altered lipids PC (39:6) and FA (22:3) offer a new set of biomarkers in addition to the existing diagnostic tests that could significantly improve sensitivity and specificity in PCa diagnosis.

Indexed as

Spectrometry, Mass, Electrospray IonizationTandem Mass SpectrometryAgedalpha-Linolenic AcidBiomarkers, TumorCell Line, TumorCell ProliferationChromatography, GasCluster AnalysisHumansLipidsMaleMiddle AgedPrincipal Component AnalysisProstatic Neoplasmsalpha-Linolenic AcidBiomarkers, TumorLipids

Identifiers

PMID26958841
PMCPMC4784901
OpenAlexW2295784817

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.