Evidence map›Paper›PMID 26957606›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Orange carotenoid protein burrows into the phycobilisome to provide photoprotection.

Dvir Harris, Ofir Tal, Denis Jallet, Adjélé Wilson, Diana Kirilovsky, Noam Adir

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 93 citations in OpenAlex.

  1. Atomistic simulations reveal the photoactivation mechanism of a carotenoid-binding photoreceptor.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. A favorable path to domain separation in the orange carotenoid protein.Protein science : a publication of the Protein Society · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Dvir HarrisSchulich Faculty of Chemistry, Technion, Haifa 32000, Israel;
Ofir TalSchulich Faculty of Chemistry, Technion, Haifa 32000, Israel;
Denis JalletInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Energie Atomique (CEA), CNRS, Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; CEA, Institut de Biologie et Technologies de Saclay (iBiTec-S), 91191 Gif-sur-Yvette, France.
Adjélé WilsonInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Energie Atomique (CEA), CNRS, Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; CEA, Institut de Biologie et Technologies de Saclay (iBiTec-S), 91191 Gif-sur-Yvette, France.
Diana KirilovskyInstitute for Integrative Biology of the Cell (I2BC), Commissariat à l'Energie Atomique (CEA), CNRS, Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; CEA, Institut de Biologie et Technologies de Saclay (iBiTec-S), 91191 Gif-sur-Yvette, France diana.kirilovsky@cea.fr nadir@tx.technion.ac.il.
Noam AdirSchulich Faculty of Chemistry, Technion, Haifa 32000, Israel; diana.kirilovsky@cea.fr nadir@tx.technion.ac.il.
Technion – Israel Institute of Technology · ILCEA Paris-Saclay · FRCentre National de la Recherche Scientifique · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In cyanobacteria, photoprotection from overexcitation of photochemical centers can be obtained by excitation energy dissipation at the level of the phycobilisome (PBS), the cyanobacterial antenna, induced by the orange carotenoid protein (OCP). A single photoactivated OCP bound to the core of the PBS affords almost total energy dissipation. The precise mechanism of OCP energy dissipation is yet to be fully determined, and one question is how the carotenoid can approach any core phycocyanobilin chromophore at a distance that can promote efficient energy quenching. We have performed intersubunit cross-linking using glutaraldehyde of the OCP and PBS followed by liquid chromatography coupled to tandem mass spectrometry (LC/MS-MS) to identify cross-linked residues. The only residues of the OCP that cross-link with the PBS are situated in the linker region, between the N- and C-terminal domains and a single C-terminal residue. These links have enabled us to construct a model of the site of OCP binding that differs from previous models. We suggest that the N-terminal domain of the OCP burrows tightly into the PBS while leaving the OCP C-terminal domain on the exterior of the complex. Further analysis shows that the position of the small core linker protein ApcC is shifted within the cylinder cavity, serving to stabilize the interaction between the OCP and the PBS. This is confirmed by a ΔApcC mutant. Penetration of the N-terminal domain can bring the OCP carotenoid to within 5-10 Å of core chromophores; however, alteration of the core structure may be the actual source of energy dissipation.

Indexed as

Bacterial ProteinsCross-Linking ReagentsEnergy TransferGlutaralModels, ChemicalModels, MolecularMutationPhycobilinsPhycobilisomesPhycocyaninProtein ConformationProtein SubunitsRadiation ToleranceSpectrometry, FluorescenceSynechocystisTandem Mass SpectrometryallophycocyaninBacterial ProteinsCross-Linking ReagentsGlutaralorange carotenoid protein, SynechocystisPhycobilinsPhycobilisomesPhycocyaninphycocyanobilinProtein Subunitscross-linkingcyanobacterialight harvestingnonphotochemical quenchingphotosynthesis

Identifiers

PMID26957606
PMCPMC4812740
OpenAlexW2296232359

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.