Evidence map›Paper›PMID 26957598›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Atomic resolution probe for allostery in the regulatory thin filament.

Michael R Williams, Sarah J Lehman, Jil C Tardiff, Steven D Schwartz

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
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  18. Variant R94C inJournal of the American Heart Association · 2020
    Article
  19. Troponin structure and function: a view of recent progress.Journal of muscle research and cell motility · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michael R WilliamsDepartment of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ 85721;
Sarah J LehmanPhysiological Sciences, The University of Arizona, Tucson, AZ 85724;
Jil C TardiffDepartment of Medicine, The University of Arizona, Tucson, AZ 85724; Department of Cellular and Molecular Medicine, The University of Arizona, Tucson, AZ 85724.
Steven D SchwartzDepartment of Chemistry and Biochemistry, The University of Arizona, Tucson, AZ 85721; sschwartz@email.arizona.edu.
University of Arizona · US

Funding

PHYSIOLOGYT32HL007249 · NHLBI · UNIVERSITY OF ARIZONA · PI Brett A Colson, JOHN P KONHILAS · 1985 to 2026
$12.5M
The interaction of myosin and the thin filament: how mutations cause allosteric dysfunction and their connection to genetic cardiomyopathyR01HL107046 · NHLBI · UNIVERSITY OF ARIZONA · PI SCHWARTZ, STEVEN D, TARDIFF, JIL C · 2011 to 2023
$6.0M
Computational and Mathematical Modeling of Biomedical SystemsT32GM084905 · NIGMS · UNIVERSITY OF ARIZONA · PI SECOMB, TIMOTHY W. · 2009 to 2018
$2.2M
NHLBI NIH HHS R01 HL107046NHLBI NIH HHS T32 HL007249NIGMS NIH HHS GM084905NIGMS NIH HHS T32 GM084905
6 · The paper itself

Abstract

Calcium binding and dissociation within the cardiac thin filament (CTF) is a fundamental regulator of normal contraction and relaxation. Although the disruption of this complex, allosterically mediated process has long been implicated in human disease, the precise atomic-level mechanisms remain opaque, greatly hampering the development of novel targeted therapies. To address this question, we used a fully atomistic CTF model to test both Ca(2+) binding strength and the energy required to remove Ca(2+) from the N-lobe binding site in WT and mutant troponin complexes that have been linked to genetic cardiomyopathies. This computational approach is combined with measurements of in vitro Ca(2+) dissociation rates in fully reconstituted WT and cardiac troponin T R92L and R92W thin filaments. These human disease mutations represent known substitutions at the same residue, reside at a significant distance from the calcium binding site in cardiac troponin C, and do not affect either the binding pocket affinity or EF-hand structure of the binding domain. Both have been shown to have significantly different effects on cardiac function in vivo. We now show that these mutations independently alter the interaction between the Ca(2+) ion and cardiac troponin I subunit. This interaction is a previously unidentified mechanism, in which mutations in one protein of a complex indirectly affect a third via structural and dynamic changes in a second to yield a pathogenic change in thin filament function that results in mutation-specific disease states. We can now provide atom-level insight that is potentially highly actionable in drug design.

Indexed as

Allosteric RegulationCalciumHumansModels, ChemicalTroponin TCalciumTroponin Tcalcium homeostasiscardiac thin filamenthypertrophic cardiomyopathymolecular modelingsteered molecular dynamics

Identifiers

PMID26957598
PMCPMC4812746
OpenAlexW2294751189

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.