Evidence map›Paper›PMID 26957563›Full record

ArticleJournal of experimental botany2016

SLTAB2 is the paramutated SULFUREA locus in tomato.

Quentin Gouil, Ondřej Novák, David C Baulcombe

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
8.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. CHROMOMETHYLTRANSFERASE3/KRYPTONITE maintains theProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Will epigenetics be a key player in crop breeding?Frontiers in plant science · 2022
    Review
  5. Review
  6. Dissection of complex traits of tomato in the post-genome era.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  7. Perspectives of CRISPR/Cas-mediatedHorticulture research · 2020
    Review
  8. Article
  9. Experimental botany in 2017.Journal of experimental botany · 2017
    Article
  10. Review
  11. Harnessing epigenome modifications for better crops.Journal of experimental botany · 2016
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Quentin GouilDepartment of Plant Sciences, University of Cambridge, Cambridge, UK.
Ondřej NovákLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany AS CR and Faculty of Science of Palacký University, CZ-78371 Olomouc, Czech Republic.
David C BaulcombeDepartment of Plant Sciences, University of Cambridge, Cambridge, UK dcb40@cam.ac.uk.
University of Cambridge · GBCzech Academy of Sciences, Institute of Experimental Botany · CZ

Funding

European Research Council 340642
6 · The paper itself

Abstract

The sulfurea (sulf) allele is a silent epigenetic variant of a tomato (Solanum lycopersicum) gene affecting pigment production. It is homozygous lethal but, in a heterozygote sulf/+, the wild-type (wt) allele undergoes silencing so that the plants exhibit chlorotic sectors. This transfer of the silenced state between alleles is termed paramutation and is best characterized in maize. To understand the mechanism of paramutation we mapped SULF to the orthologue SLTAB2 of an Arabidopsis gene that, consistent with the pigment deficiency, is involved in the translation of photosystem I. Paramutation of SLTAB2 is linked to an increase in DNA methylation and the production of small interfering RNAs at its promoter. Virus-induced gene silencing of SLTAB2 phenocopies sulf, consistent with the possibility that siRNAs mediate the paramutation of SULFUREA Unlike the maize systems, the paramutagenicity of sulf is not, however, associated with repeated sequences at the region of siRNA production or DNA methylation.

Indexed as

AllelesArabidopsisDNA MethylationEpigenesis, GeneticGene Expression ProfilingGenes, PlantMutationPhotosystem I Protein ComplexSolanum lycopersicumZea maysPhotosystem I Protein ComplexAuxinDNA methylationparamutationphotosynthesisRdDMsiRNASULFUREAVIGS.

Identifiers

PMID26957563
PMCPMC4861014
OpenAlexW2297880670

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.