Evidence map›Paper›PMID 26957546›Full record

ArticleThe Journal of biological chemistry2016

Structural Basis for Translocation of a Biofilm-supporting Exopolysaccharide across the Bacterial Outer Membrane.

Yan Wang, Archana Andole Pannuri, Dongchun Ni, Haizhen Zhou, Xiou Cao, Xiaomei Lu, Tony Romeo, Yihua Huang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 56 citations in OpenAlex.

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  19. Advances in Understanding of the Copper Homeostasis inInternational journal of molecular sciences · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Yan WangFrom the National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, University of Chinese Academy of Sciences, Beijing 100049, China.
Archana Andole PannuriDepartment of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, Florida 32611-0700.
Dongchun NiDepartment of Cardiovascular Diseases, Tianjin Xiqing Hospital, Tianjin 300380, China.
Haizhen ZhouFrom the National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Xiou CaoSchool of Life Sciences, Peking University, Beijing 100871, China, and.
Xiaomei LuDongguan Institute of Pediatrics, the Eighth People's Hospital of Dongguan, Dongguan 523325, Guangdong Province, China.
Tony RomeoDepartment of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, Florida 32611-0700, tromeo@ufl.edu.
Yihua HuangFrom the National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China, yihuahuang@sun5.ibp.ac.cn.
Institute of Biophysics · CNUniversity of Florida · USChinese Academy of Sciences · CNDongguan People’s Hospital · CNPeking University · CNTianjin Hospital · CN

Funding

Mechanism of CsrA-mediated global regulationR01GM059969 · NIGMS · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI BABITZKE, PAUL L, ROMEO, TONY · 1999 to 2021
$7.6M
Biofilm Formation and Dispersal MechanismsR01GM066794 · NIGMS · UNIVERSITY OF FLORIDA · PI ROMEO, TONY · 2003 to 2011
$2.5M
NIGMS NIH HHS R01 GM059969NIGMS NIH HHS R01 GM066794
6 · The paper itself

Abstract

The partially de-N-acetylated poly-β-1,6-N-acetyl-d-glucosamine (dPNAG) polymer serves as an intercellular biofilm adhesin that plays an essential role for the development and maintenance of integrity of biofilms of diverse bacterial species. Translocation of dPNAG across the bacterial outer membrane is mediated by a tetratricopeptide repeat-containing outer membrane protein, PgaA. To understand the molecular basis of dPNAG translocation, we determined the crystal structure of the C-terminal transmembrane domain of PgaA (residues 513-807). The structure reveals that PgaA forms a 16-strand transmembrane β-barrel, closed by four loops on the extracellular surface. Half of the interior surface of the barrel that lies parallel to the translocation pathway is electronegative, suggesting that the corresponding negatively charged residues may assist the secretion of the positively charged dPNAG polymer. In vivo complementation assays in a pgaA deletion bacterial strain showed that a cluster of negatively charged residues proximal to the periplasm is necessary for biofilm formation. Biochemical analyses further revealed that the tetratricopeptide repeat domain of PgaA binds directly to the N-deacetylase PgaB and is critical for biofilm formation. Our studies support a model in which the positively charged PgaB-bound dPNAG polymer is delivered to PgaA through the PgaA-PgaB interaction and is further targeted to the β-barrel lumen of PgaA potentially via a charge complementarity mechanism, thus priming the translocation of dPNAG across the bacterial outer membrane.

Indexed as

Bacterial Physiological PhenomenaAcetylationAmidohydrolasesBacterial Outer Membrane ProteinsBiofilmsCell MembraneCrystallography, X-RayEscherichia coliEscherichia coli ProteinsImmunoblottingPolymersPolysaccharides, BacterialProtein ConformationAmidohydrolasesBacterial Outer Membrane ProteinsEscherichia coli ProteinspgaA protein, E colipoly-beta-1,6-N-acetyl-D-glucosamine de-N-acetylase, E coliPolymersPolysaccharides, Bacterialbacterial adhesionbiofilmexopolysaccharideextracellular matrixmembrane proteinouter membraneouter membrane proteinPgaApolysaccharidepoly-β-1,6-N-acetyl-d-glucosaminetranslocation

Identifiers

PMID26957546
PMCPMC4858958
OpenAlexW2295316676

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.