Evidence map›Paper›PMID 26957043›Full record

ArticleNature communications2016

Open-gate mutants of the mammalian proteasome show enhanced ubiquitin-conjugate degradation.

Won Hoon Choi, Stefanie A H de Poot, Jung Hoon Lee, Ji Hyeon Kim, Dong Hoon Han, Yun Kyung Kim, Daniel Finley, Min Jae Lee

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it, 105 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Won Hoon ChoiDepartment of Biomedical Sciences, Seoul National University Graduate School, Seoul 03080, Korea.
Stefanie A H de PootDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Jung Hoon LeeDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul 03080, Korea.
Ji Hyeon KimDepartment of Biomedical Sciences, Seoul National University Graduate School, Seoul 03080, Korea.
Dong Hoon HanDepartment of Biochemistry and Molecular Biology, Seoul National University College of Medicine, Seoul 03080, Korea.
Yun Kyung KimCenter for Neuro-Medicine, Korea Institute of Science and Technology (KIST), Seoul 02790, Korea.
Daniel FinleyDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Min Jae LeeDepartment of Biomedical Sciences, Seoul National University Graduate School, Seoul 03080, Korea.ORCID http://orcid.org/0000-0002-3252-6467
Seoul National University · KRHarvard University · USKorea Institute of Science and Technology · KR

Funding

Functional Analysis of the Proteasome BaseR37GM043601 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI FINLEY, DANIEL J · 2004 to 2013
$5.9M
UBIQUITIN-PROTEIN CONJUGATES AND FUSIONSR01GM043601 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI FINLEY, DANIEL J · 1990 to 2020
$4.3M
NIGMS NIH HHS GM043601NIGMS NIH HHS R01 GM043601NIGMS NIH HHS R37 GM043601
6 · The paper itself

Abstract

When in the closed form, the substrate translocation channel of the proteasome core particle (CP) is blocked by the convergent N termini of α-subunits. To probe the role of channel gating in mammalian proteasomes, we deleted the N-terminal tail of α3; the resulting α3ΔN proteasomes are intact but hyperactive in the hydrolysis of fluorogenic peptide substrates and the degradation of polyubiquitinated proteins. Cells expressing the hyperactive proteasomes show markedly elevated degradation of many established proteasome substrates and resistance to oxidative stress. Multiplexed quantitative proteomics revealed ∼ 200 proteins with reduced levels in the mutant cells. Potentially toxic proteins such as tau exhibit reduced accumulation and aggregate formation. These data demonstrate that the CP gate is a key negative regulator of proteasome function in mammals, and that opening the CP gate may be an effective strategy to increase proteasome activity and reduce levels of toxic proteins in cells.

Indexed as

ProteolysisCell LineHumansHydrolysisMutationProteasome Endopeptidase ComplexProteinsProtein Structure, TertiaryUbiquitinProteasome Endopeptidase ComplexProteinsUbiquitin

Identifiers

PMID26957043
PMCPMC4786872
OpenAlexW2293361526

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.