Evidence map›Paper›PMID 26956612›Full record

ArticleBMC biotechnology2016

A simple, accurate and universal method for quantification of PCR.

Nicky Boulter, Francia Garces Suarez, Stephen Schibeci, Trevor Sunderland, Ornella Tolhurst, Tegan Hunter, George Hodge, David Handelsman, Ulla Simanainen, Edward Hendriks and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 67 citations in OpenAlex.

  1. Selection of reference genes for quantitative PCR: identifying reference genes for airway epithelial cells exposed toAmerican journal of physiology. Lung cellular and molecular physiology · 2020
    Pooled it
  2. Article
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  6. Article
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  8. Detection and quantification ofThe veterinary quarterly · 2024
    Article
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  16. Review
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  18. The impact of coronavirus SARS-CoV-2 (COVID-19) in water: potential risks.Environmental science and pollution research international · 2021
    Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 5 countries.

Nicky BoulterAccugen Pty Ltd, 11 Julius Avenue, North Ryde, NSW, 2113, Australia. nicolab@accugen.com.au.
Francia Garces SuarezANZAC Research Institute, University of Sydney, Sydney, NSW, 2139, Australia. francia.suarez@sydney.edu.au.
Stephen SchibeciWestmead Millennium Institute, 176 Hawkesbury Road, Westmead, NSW, 2145, Australia. stephen.schibeci@sydney.edu.au.
Trevor SunderlandBitfuturistic Solutions, 9623 Lawndale Avenue SW, Lakewood, WA, 98498, USA. tsunderland@bitfuturistic.com.
Ornella TolhurstAccugen Pty Ltd, 11 Julius Avenue, North Ryde, NSW, 2113, Australia. otolhurst@vectusbiosystems.com.au.
Tegan HunterAccugen Pty Ltd, 11 Julius Avenue, North Ryde, NSW, 2113, Australia. tegan.hunter@newcastle.edu.au.
George HodgeVectus Biosystems Pty Ltd, 11 Julius Avenue, North Ryde, NSW, 2113, Australia. ghodge@vectusbiosystems.com.au.
David HandelsmanANZAC Research Institute, University of Sydney, Sydney, NSW, 2139, Australia. djh@anzac.edu.au.
Ulla SimanainenANZAC Research Institute, University of Sydney, Sydney, NSW, 2139, Australia. usimanainen@anzac.edu.au.
Edward HendriksAccugen Pty Ltd, 11 Julius Avenue, North Ryde, NSW, 2113, Australia. ehendriks@vectusbiosystems.com.au.
Karen DugganAccugen Pty Ltd, 11 Julius Avenue, North Ryde, NSW, 2113, Australia. kduggan@vectusbiosystems.com.au.
Vesuvius (United Kingdom) · GBThe University of Sydney · AUBiju Patnaik University of Technology · INCompugen (Israel) · ILHunter Water · AUMillennium Institute · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundResearch into gene expression enables scientists to decipher the complex regulatory networks that control fundamental biological processes. Quantitative real-time PCR (qPCR) is a powerful and ubiquitous method for interrogation of gene expression. Accurate quantification is essential for correct interpretation of qPCR data. However, conventional relative and absolute quantification methodologies often give erroneous results or are laborious to perform. To overcome these failings, we developed an accurate, simple to use, universal calibrator, AccuCal.

resultsHerein, we show that AccuCal quantification can be used with either dye- or probe-based detection methods and is accurate over a dynamic range of ≥10(5) copies, for amplicons up to 500 base pairs (bp). By providing absolute quantification of all genes of interest, AccuCal exposes, and circumvents, the well-known biases of qPCR, thus allowing objective experimental conclusions to be drawn.

conclusionWe propose that AccuCal supersedes the traditional quantification methods of PCR.

Indexed as

AnimalsCalibrationCells, CulturedDNAGene ExpressionHumansLeukocytes, MononuclearMiceReal-Time Polymerase Chain ReactionDNA

Identifiers

PMID26956612
PMCPMC4784296
OpenAlexW2294765121

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.