Evidence map›Paper›PMID 26956052›Full record

ArticleOncotarget2016

Survival kinase genes present prognostic significance in glioblastoma.

Robin T Varghese, Yanping Liang, Ting Guan, Christopher T Franck, Deborah F Kelly, Zhi Sheng

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 76 citations in OpenAlex.

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  15. In Mitosis You Are Not: The NIMA Family of Kinases inInternational journal of molecular sciences · 2022
    Review
  16. Article
  17. Personalized 3-Gene Panel for Prostate Cancer Target Therapy.Current issues in molecular biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Robin T VargheseVirginia Tech Carilion Research Institute, Roanoke, VA 24016, USA.
Yanping LiangVirginia Tech Carilion Research Institute, Roanoke, VA 24016, USA.
Ting GuanLaboratory for Interdisciplinary Statistical Analysis, Department of Statistics, Virginia Tech, Blacksburg, VA 24061, USA.
Christopher T FranckVirginia Tech Carilion Research Institute, Roanoke, VA 24016, USA.
Deborah F KellyVirginia Tech Carilion Research Institute, Roanoke, VA 24016, USA.
Zhi ShengVirginia Tech Carilion Research Institute, Roanoke, VA 24016, USA.
Carilion Clinic · USVirginia Tech · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cancer biomarkers with a strong predictive power for diagnosis/prognosis and a potential to be therapeutic targets have not yet been fully established. Here we employed a loss-of-function screen in glioblastoma (GBM), an infiltrative brain tumor with a dismal prognosis, and identified 20 survival kinase genes (SKGs). Survival analyses using The Cancer Genome Atlas (TCGA) datasets revealed that the expression of CDCP1, CDKL5, CSNK1E, IRAK3, LATS2, PRKAA1, STK3, TBRG4, and ULK4 stratified GBM prognosis with or without temozolomide (TMZ) treatment as a covariate. For the first time, we found that GBM patients with a high level of NEK9 and PIK3CB had a greater chance of having recurrent tumors. The expression of CDCP1, IGF2R, IRAK3, LATS2, PIK3CB, ULK4, or VRK1 in primary GBM tumors was associated with recurrence-related prognosis. Notably, the level of PIK3CB in recurrent tumors was much higher than that in newly diagnosed ones. Congruent with these results, genes in the PI3K/AKT pathway showed a significantly strong correlation with recurrence rate, further highlighting the pivotal role of PIK3CB in the disease progression. Importantly, 17 SKGs together presented a novel GBM prognostic signature. SKGs identified herein are associated with recurrence rate and present prognostic significance in GBM, thereby becoming attractive therapeutic targets.

Indexed as

Antineoplastic AgentsApoptosisBiomarkers, TumorBrain NeoplasmsCell ProliferationGene Expression Regulation, NeoplasticGlioblastomaHigh-Throughput Screening AssaysHumansNeoplasm Recurrence, LocalNeoplasm StagingPrognosisProtein KinasesRNA, Small InterferingSurvival RateTumor Cells, CulturedAntineoplastic AgentsBiomarkers, TumorProtein KinasesRNA, Small InterferingglioblastomaPIK3CBprognosissurvival kinase genestumor recurrence

Identifiers

PMID26956052
PMCPMC4991443
OpenAlexW2296208951

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.