Evidence map›Paper›PMID 26954687›Full record

ArticlePloS one2016

Population Structure and Antimicrobial Resistance Profiles of Streptococcus suis Serotype 2 Sequence Type 25 Strains.

Taryn B T Athey, Sarah Teatero, Daisuke Takamatsu, Jessica Wasserscheid, Ken Dewar, Marcelo Gottschalk, Nahuel Fittipaldi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genomic and Antimicrobial Resistance Analysis of an ST25Pathogens (Basel, Switzerland) · 2025
    Article
  5. The genotypic characterization ofFrontiers in microbiology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Microbial genomics · 2023
    Article
  14. Population structure and genetic diversity ofFrontiers in microbiology · 2023
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Genomic and pathogenic investigations ofEmerging microbes & infections · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Taryn B T AtheyPublic Health Ontario, Toronto, ON, Canada.
Sarah TeateroPublic Health Ontario, Toronto, ON, Canada.
Daisuke TakamatsuBacterial and Parasitic Diseases Research Division, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, Japan.
Jessica WasserscheidDepartment of Human Genetics, McGill University and Génome Québec Innovation Centre, Montreal, QC, Canada.
Ken DewarDepartment of Human Genetics, McGill University and Génome Québec Innovation Centre, Montreal, QC, Canada.
Marcelo GottschalkGroupe de Recherche sur les Maladies Infectieuses du Porc, Faculté de Médecine Vétérinaire, Université de Montréal, St-Hyacinthe, QC, Canada.
Nahuel FittipaldiPublic Health Ontario, Toronto, ON, Canada.
McGill University and Génome Québec Innovation Centre · CAPublic Health Ontario · CAGifu University · JPUniversité de Montréal · CAUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strains of serotype 2 Streptococcus suis are responsible for swine and human infections. Different serotype 2 genetic backgrounds have been defined using multilocus sequence typing (MLST). However, little is known about the genetic diversity within each MLST sequence type (ST). Here, we used whole-genome sequencing to test the hypothesis that S. suis serotype 2 strains of the ST25 lineage are genetically heterogeneous. We evaluated 51 serotype 2 ST25 S. suis strains isolated from diseased pigs and humans in Canada, the United States of America, and Thailand. Whole-genome sequencing revealed numerous large-scale rearrangements in the ST25 genome, compared to the genomes of ST1 and ST28 S. suis strains, which result, among other changes, in disruption of a pilus island locus. We report that recombination and lateral gene transfer contribute to ST25 genetic diversity. Phylogenetic analysis identified two main and distinct Thai and North American clades grouping most strains investigated. These clades also possessed distinct patterns of antimicrobial resistance genes, which correlated with acquisition of different integrative and conjugative elements (ICEs). Some of these ICEs were found to be integrated at a recombination hot spot, previously identified as the site of integration of the 89K pathogenicity island in serotype 2 ST7 S. suis strains. Our results highlight the limitations of MLST for phylogenetic analysis of S. suis, and the importance of lateral gene transfer and recombination as drivers of diversity in this swine pathogen and zoonotic agent.

Indexed as

Drug Resistance, BacterialAnti-Bacterial AgentsDNA Transposable ElementsGene OrderGenome, BacterialHigh-Throughput Nucleotide SequencingMicrobial Sensitivity TestsPhylogenyPolymorphism, Single NucleotideRecombination, GeneticSerogroupStreptococcus suisAnti-Bacterial AgentsDNA Transposable Elements

Identifiers

PMID26954687
PMCPMC4783015
OpenAlexW2296560393

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.