Evidence map›Paper›PMID 26953931›Full record

ArticlePloS one2016

Mobilization of Genomic Islands of Staphylococcus aureus by Temperate Bacteriophage.

Bo Youn Moon, Joo Youn Park, D Ashley Robinson, Jonathan C Thomas, Yong Ho Park, Justin A Thornton, Keun Seok Seo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  10. Genomic Analysis ofMicroorganisms · 2021
    Article
  11. Article
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  13. Review
  14. Induction of Immunosuppressive CD8Journal of immunology (Baltimore, Md. : 1950) · 2018
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Bo Youn MoonDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, United States of America.
Joo Youn ParkDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, United States of America.
D Ashley RobinsonDepartment of Microbiology and Immunology, University of Mississippi Medical Center, Jackson, MS 39216, United States of America.
Jonathan C ThomasDepartment of Biology, University of Bolton, Bolton, Greater Manchester, BL3 5AB United Kingdom.
Yong Ho ParkDepartment of Microbiology, College of Veterinary Medicine and BK21 Program for Veterinary Science, Seoul National University, Seoul, 151-742, South Korea.
Justin A ThorntonDepartment of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, United States of America.
Keun Seok SeoDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762, United States of America.
Mississippi State University · USSeoul National University · KRUniversity of Bolton · GBUniversity of Mississippi Medical Center · US

Funding

Zinc dependent conformational changes in AdcR and their impact on DNA bindingP20GM103646 · NIGMS · MISSISSIPPI STATE UNIVERSITY · PI THIBAUDEAU, GISELLE · 2013 to 2022
$21.1M
Population Genomics of StaphylococciR01GM080602 · NIGMS · UNIVERSITY OF MISSISSIPPI MED CTR · PI ROBINSON, DAVID ASHLEY · 2007 to 2016
$1.8M
NIGMS NIH HHS 1P20GM103646-01A1NIGMS NIH HHS GM080602NIGMS NIH HHS P20 GM103646NIGMS NIH HHS R01 GM080602
6 · The paper itself

Abstract

The virulence of Staphylococcus aureus, in both human and animal hosts, is largely influenced by the acquisition of mobile genetic elements (MGEs). Most S. aureus strains carry a variety of MGEs, including three genomic islands (νSaα, νSaβ, νSaγ) that are diverse in virulence gene content but conserved within strain lineages. Although the mobilization of pathogenicity islands, phages and plasmids has been well studied, the mobilization of genomic islands is poorly understood. We previously demonstrated the mobilization of νSaβ by the adjacent temperate bacteriophage ϕSaBov from strain RF122. In this study, we demonstrate that ϕSaBov mediates the mobilization of νSaα and νSaγ, which are located remotely from ϕSaBov, mostly to recipient strains belonging to ST151. Phage DNA sequence analysis revealed that chromosomal DNA excision events from RF122 were highly specific to MGEs, suggesting sequence-specific DNA excision and packaging events rather than generalized transduction by a temperate phage. Disruption of the int gene in ϕSaBov did not affect phage DNA excision, packaging, and integration events. However, disruption of the terL gene completely abolished phage DNA packing events, suggesting that the primary function of temperate phage in the transfer of genomic islands is to allow for phage DNA packaging by TerL and that transducing phage particles are the actual vehicle for transfer. These results extend our understanding of the important role of bacteriophage in the horizontal transfer and evolution of genomic islands in S. aureus.

Indexed as

DNA Transposable ElementsGenomic IslandsBinding SitesDNA PackagingEndodeoxyribonucleasesGene DosageGene OrderGenome, ViralIntegrasesMutagenesis, InsertionalNucleotide MotifsPosition-Specific Scoring MatricesProtein BindingSequence Analysis, DNAStaphylococcus aureusStaphylococcus PhagesDNA Transposable ElementsEndodeoxyribonucleasesIntegrasesterminase

Identifiers

PMID26953931
PMCPMC4783081
OpenAlexW2294361662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.