Evidence map›Paper›PMID 26953207›Full record

ArticleAntimicrobial agents and chemotherapy2016

Distribution and Relationships of Antimicrobial Resistance Determinants among Extended-Spectrum-Cephalosporin-Resistant or Carbapenem-Resistant Escherichia coli Isolates from Rivers and Sewage Treatment Plants in India.

Masato Akiba, Tsuyoshi Sekizuka, Akifumi Yamashita, Makoto Kuroda, Yuki Fujii, Misato Murata, Ken-Ichi Lee, Derrick Ian Joshua, Keshava Balakrishna, Indira Bairy and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
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  6. Genomic investigation unveils high-risk ESBL producingCurrent research in microbial sciences · 2024
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  7. Review
  8. NDM-5-carrying3 Biotech · 2023
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  9. Article
  10. Review
  11. Clinically Relevant β-Lactam Resistance Genes in Wastewater Treatment Plants.International journal of environmental research and public health · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Association of Carbapenemase-ProducingFrontiers in microbiology · 2022
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

Masato AkibaBacterial and Parasitic Disease Research Division, National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Osaka, Japan akiba@affrc.go.jp.
Tsuyoshi SekizukaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Akifumi YamashitaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Makoto KurodaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Yuki FujiiKenhoku Livestock Hygiene Service Center of Ibaraki Prefecture, Ibaraki, Japan.
Misato MurataChuo Livestock Hygiene Service Center of Kumamoto Prefecture, Kumamoto, Japan.
Ken-Ichi LeeBacterial and Parasitic Disease Research Division, National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan.
Derrick Ian JoshuaDepartment of Civil Engineering, Manipal Institute of Technology, Manipal University, Manipal, India.
Keshava BalakrishnaDepartment of Civil Engineering, Manipal Institute of Technology, Manipal University, Manipal, India.
Indira BairyDepartment of Microbiology, Melaka Manipal Medical College, Manipal University, Manipal, India.
Kaushik SubramanianDepartment of Microbiology, Dr. ALM PG Institute of Basic Medical Sciences, University of Madras, Chennai, India.
Padma KrishnanDepartment of Microbiology, Dr. ALM PG Institute of Basic Medical Sciences, University of Madras, Chennai, India.
Natesan MunuswamyDepartment of Zoology, University of Madras, Chennai, India.
Ravindra K SinhaDepartment of Zoology, Patna University, Patna, India.
Taketoshi IwataBacterial and Parasitic Disease Research Division, National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan.
Masahiro KusumotoBacterial and Parasitic Disease Research Division, National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan.
Keerthi S GurugePathology and Pathophysiology Research Division, National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan.
Manipal Academy of Higher Education · INNational Agriculture and Food Research Organization · JPNational Institute of Infectious Diseases · JPUniversity of Madras · INNational Institute of Animal Health · JPIbaraki Prefectural Livestock Center · JPPatna University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To determine the distribution and relationship of antimicrobial resistance determinants among extended-spectrum-cephalosporin (ESC)-resistant or carbapenem-resistant Escherichia coli isolates from the aquatic environment in India, water samples were collected from rivers or sewage treatment plants in five Indian states. A total of 446 E. coli isolates were randomly obtained. Resistance to ESC and/or carbapenem was observed in 169 (37.9%) E. coli isolates, which were further analyzed. These isolates showed resistance to numerous antimicrobials; more than half of the isolates exhibited resistance to eight or more antimicrobials. The blaNDM gene was detected in 14/21 carbapenem-resistant E. coli isolates: blaNDM-1 in 2 isolates, blaNDM-5 in 7 isolates, and blaNDM-7 in 5 isolates. The blaCTX-M gene was detected in 112 isolates (66.3%): blaCTX-M-15 in 108 isolates and blaCTX-M-55 in 4 isolates. We extracted 49 plasmids from selected isolates, and their whole-genome sequences were determined. Fifty resistance genes were detected, and 11 different combinations of replicon types were observed among the 49 plasmids. The network analysis results suggested that the plasmids sharing replicon types tended to form a community, which is based on the predicted gene similarity among the plasmids. Four communities each containing from 4 to 17 plasmids were observed. Three of the four communities contained plasmids detected in different Indian states, suggesting that the interstate dissemination of ancestor plasmids has already occurred. Comparison of the DNA sequences of the blaNDM-positive plasmids detected in this study with known sequences of related plasmids suggested that various mutation events facilitated the evolution of the plasmids and that plasmids with similar genetic backgrounds have widely disseminated in India.

Indexed as

Anti-Bacterial AgentsCarbapenemsCephalosporinsDrug Resistance, Multiple, BacterialEscherichia coliIndiaMicrobial Sensitivity TestsPlasmidsRiversSewageWater PurificationAnti-Bacterial AgentsCarbapenemsCephalosporinsSewage

Identifiers

PMID26953207
PMCPMC4862527
OpenAlexW2294356061

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.