Evidence map›Paper›PMID 26952864›Full record

ArticleMolecular psychiatry2016

A rare missense mutation in CHRNA4 associates with smoking behavior and its consequences.

T E Thorgeirsson, S Steinberg, G W Reginsson, G Bjornsdottir, T Rafnar, I Jonsdottir, A Helgadottir, S Gretarsdottir, H Helgadottir, S Jonsson and 25 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 4 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 4 syntheses or guidelines pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Trial
  6. Review
  7. Article
  8. Review
  9. Hedgehog-interacting protein acts in the habenula to regulate nicotine intake.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. A Novel Tobacco Use Phenotype Suggests the 15q25 and 19q13 Loci May be Differentially Associated With Cigarettes per Day and Tobacco-Related Problems.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2017
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 11 institutions in 7 countries.

T E ThorgeirssondeCODE genetics/Amgen, Reykjavik, Iceland.
S SteinbergdeCODE genetics/Amgen, Reykjavik, Iceland.
G W ReginssondeCODE genetics/Amgen, Reykjavik, Iceland.
G BjornsdottirdeCODE genetics/Amgen, Reykjavik, Iceland.
T RafnardeCODE genetics/Amgen, Reykjavik, Iceland.
I JonsdottirdeCODE genetics/Amgen, Reykjavik, Iceland.ORCID http://orcid.org/0000-0001-8339-150X
A HelgadottirdeCODE genetics/Amgen, Reykjavik, Iceland.
S GretarsdottirdeCODE genetics/Amgen, Reykjavik, Iceland.
H HelgadottirdeCODE genetics/Amgen, Reykjavik, Iceland.
S JonssonFaculty of Medicine, University of Iceland, Reykjavik, Iceland.
S E MatthiassonLaekning, Medical Clinics, Reykjavik, Iceland.
T GislasonFaculty of Medicine, University of Iceland, Reykjavik, Iceland.
T TyrfingssonSAA National Center of Addiction Medicine, Reykjavik, Iceland.
T GudbjartssonFaculty of Medicine, University of Iceland, Reykjavik, Iceland.
H J IsakssonDepartment of Pathology, Landspitali University Hospital, Reykjavik, Iceland.
H HardardottirDepartment of Respiratory Medicine, Landspitali University Hospital, Reykjavik, Iceland.
A SigvaldasonDepartment of Respiratory Medicine, Landspitali University Hospital, Reykjavik, Iceland.
L A KiemeneyRadboud Institute for Health Sciences, Radboud University Medical Center, Nijmegen, The Netherlands.
A HaugenDepartment for the Chemical and Biological Work Environment, National Institute of Occupational Health, Oslo, Norway.
S ZienolddinyDepartment for the Chemical and Biological Work Environment, National Institute of Occupational Health, Oslo, Norway.
H J WolfCommunity & Behavioral Health, Colorado School of Public Health, University of Colorado Denver, Aurora, CO, USA.
W A FranklinDepartment of Pathology, University of Colorado Denver, Aurora, CO, USA.
A PanaderoDivision of Medical Oncology, Hospital Ciudad de Coria, Coria, Spain.
J I MayordomoDivision of Medical Oncology, University of Colorado School of Medicine, Denver, CO, USA.
I P HallDivision of Respiratory Medicine, Queens Medical Centre, University of Nottingham, Nottingham, UK.
E RönmarkThe OLIN studies, Department of Medicine, Sunderby Central Hospital of Norrbotten, Luleå, Sweden.
B LundbäckThe OLIN studies, Department of Medicine, Sunderby Central Hospital of Norrbotten, Luleå, Sweden.
A DirksenDepartment of Respiratory Medicine, Gentofte Hospital, Copenhagen University, Hellerup, Denmark.
H AshrafDepartment of Respiratory Medicine, Gentofte Hospital, Copenhagen University, Hellerup, Denmark.
J H PedersenDepartment of Thoracic Surgery RT, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
G MassondeCODE genetics/Amgen, Reykjavik, Iceland.
P SulemdeCODE genetics/Amgen, Reykjavik, Iceland.ORCID http://orcid.org/0000-0001-7123-6123
U ThorsteinsdottirdeCODE genetics/Amgen, Reykjavik, Iceland.
D F GudbjartssondeCODE genetics/Amgen, Reykjavik, Iceland.
K StefanssondeCODE genetics/Amgen, Reykjavik, Iceland.
deCODE Genetics (Iceland) · ISReykjavík University · ISNational Institute of Occupational Health · NOSunderby sjukhus · SEUniversity of Colorado Denver · USAkershus University Hospital · NOColorado School of Public Health · USGentofte Hospital · DKRadboud University Nijmegen · NLUniversity of Copenhagen · DKUniversity of Nottingham · GB

Funding

Genes contributing to nicotine dependence in humansR01DA017932 · NIDA · DECODE GENETICS, INC. · PI STEFANSSON, KARI · 2005 to 2015
$9.6M
NIDA NIH HHS R01 DA017932NIDA NIH HHS R01-DA017932
6 · The paper itself

Abstract

Using Icelandic whole-genome sequence data and an imputation approach we searched for rare sequence variants in CHRNA4 and tested them for association with nicotine dependence. We show that carriers of a rare missense variant (allele frequency=0.24%) within CHRNA4, encoding an R336C substitution, have greater risk of nicotine addiction than non-carriers as assessed by the Fagerstrom Test for Nicotine Dependence (P=1.2 × 10(-4)). The variant also confers risk of several serious smoking-related diseases previously shown to be associated with the D398N substitution in CHRNA5. We observed odds ratios (ORs) of 1.7-2.3 for lung cancer (LC; P=4.0 × 10(-4)), chronic obstructive pulmonary disease (COPD; P=9.3 × 10(-4)), peripheral artery disease (PAD; P=0.090) and abdominal aortic aneurysms (AAAs; P=0.12), and the variant associates strongly with the early-onset forms of LC (OR=4.49, P=2.2 × 10(-4)), COPD (OR=3.22, P=2.9 × 10(-4)), PAD (OR=3.47, P=9.2 × 10(-3)) and AAA (OR=6.44, P=6.3 × 10(-3)). Joint analysis of the four smoking-related diseases reveals significant association (P=6.8 × 10(-5)), particularly for early-onset cases (P=2.1 × 10(-7)). Our results are in agreement with functional studies showing that the human α4β2 isoform of the channel containing R336C has less sensitivity for its agonists than the wild-type form following nicotine incubation.

Indexed as

Genetic Predisposition to DiseaseMutation, MissenseAdolescentAdultAgedAged, 80 and overAortic Aneurysm, AbdominalFemaleGenetic Association StudiesHumansIcelandLung NeoplasmsMaleMiddle AgedPeripheral Arterial DiseasePulmonary Disease, Chronic ObstructiveReceptors, Nicotinic

Identifiers

PMID26952864
PMCPMC5414061
OpenAlexW2295282729

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.