Evidence map›Paper›PMID 26952209›Full record

ArticleeLife2016

Degradation of Gadd45 mRNA by nonsense-mediated decay is essential for viability.

Jonathan O Nelson, Kristin A Moore, Alex Chapin, Julie Hollien, Mark M Metzstein

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 78 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jonathan O NelsonDepartment of Human Genetics, University of Utah, Salt Lake City, United States.ORCID 0000-0001-9831-745X
Kristin A MooreDepartment of Biology, University of Utah, Salt Lake City, United States.
Alex ChapinDepartment of Human Genetics, University of Utah, Salt Lake City, United States.
Julie HollienDepartment of Biology, University of Utah, Salt Lake City, United States.
Mark M MetzsteinDepartment of Human Genetics, University of Utah, Salt Lake City, United States.ORCID 0000-0002-4105-2750
University of Utah · US

Funding

Analysis of nonsense mediated mRNA decay in DrosophilaR01GM084011 · NIGMS · UNIVERSITY OF UTAH · PI METZSTEIN, MARK M · 2008 to 2012
$1.4M
NIGMS NIH HHS R01 GM084011
6 · The paper itself

Abstract

The nonsense-mediated mRNA decay (NMD) pathway functions to degrade both abnormal and wild-type mRNAs. NMD is essential for viability in most organisms, but the molecular basis for this requirement is unknown. Here we show that a single, conserved NMD target, the mRNA coding for the stress response factor growth arrest and DNA-damage inducible 45 (GADD45) can account for lethality in Drosophila lacking core NMD genes. Moreover, depletion of Gadd45 in mammalian cells rescues the cell survival defects associated with NMD knockdown. Our findings demonstrate that degradation of Gadd45 mRNA is the essential NMD function and, surprisingly, that the surveillance of abnormal mRNAs by this pathway is not necessarily required for viability.

Indexed as

Nonsense Mediated mRNA DecayAnimalsCell LineCell SurvivalDrosophilaGADD45 ProteinsHumansIntracellular Signaling Peptides and ProteinsMiceGADD45 ProteinsIntracellular Signaling Peptides and Proteinscell biologydrosophilagadd45<i>d. melanogaster</i>mRNA decayNMDupf1upf2

Identifiers

PMID26952209
PMCPMC4848089
OpenAlexW2322999861

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.