Evidence map›Paper›PMID 26951048›Full record

ArticleMolecular genetics and genomics : MGG2016

Genome-wide identification of WRKY family genes in peach and analysis of WRKY expression during bud dormancy.

Min Chen, Qiuping Tan, Mingyue Sun, Dongmei Li, Xiling Fu, Xiude Chen, Wei Xiao, Ling Li, Dongsheng Gao

Abstract read
In one paragraph

Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

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0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
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  8. Comprehensive Expression Analysis of the WRKY Gene Family inInternational journal of molecular sciences · 2024
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  9. Article
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  11. Article
  12. Article
  13. Article
  14. Chromosome-scale genome assembly ofHorticulture research · 2023
    Article
  15. Review
  16. Article
  17. Genome-Wide Identification ofInternational journal of molecular sciences · 2022
    Article
  18. Cells · 2022
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  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Min ChenCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China.
Qiuping TanCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China.
Mingyue SunCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China.
Dongmei LiCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China.
Xiling FuCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China.
Xiude ChenCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China.
Wei XiaoCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China.
Ling LiCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China. lilingsdau@163.com.
Dongsheng GaoCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Road, Tai'an, 271018, China. dsgao@sdau.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bud dormancy in deciduous fruit trees is an important adaptive mechanism for their survival in cold climates. The WRKY genes participate in several developmental and physiological processes, including dormancy. However, the dormancy mechanisms of WRKY genes have not been studied in detail. We conducted a genome-wide analysis and identified 58 WRKY genes in peach. These putative genes were located on all eight chromosomes. In bioinformatics analyses, we compared the sequences of WRKY genes from peach, rice, and Arabidopsis. In a cluster analysis, the gene sequences formed three groups, of which group II was further divided into five subgroups. Gene structure was highly conserved within each group, especially in groups IId and III. Gene expression analyses by qRT-PCR showed that WRKY genes showed different expression patterns in peach buds during dormancy. The mean expression levels of six WRKY genes (Prupe.6G286000, Prupe.1G393000, Prupe.1G114800, Prupe.1G071400, Prupe.2G185100, and Prupe.2G307400) increased during endodormancy and decreased during ecodormancy, indicating that these six WRKY genes may play a role in dormancy in a perennial fruit tree. This information will be useful for selecting fruit trees with desirable dormancy characteristics or for manipulating dormancy in genetic engineering programs.

Indexed as

Plant DormancyChromosome MappingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGene FrequencyGenome, PlantPhylogenyPlant ProteinsPrunus persicaTranscription FactorsPlant ProteinsTranscription FactorsBud dormancyPeachWRKY transcription factors

Identifiers

PMID26951048
PMCPMC4875958

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.