Evidence map›Paper›PMID 26950262›Full record

ArticleMolecular plant pathology2017

Optimization of the HyPer sensor for robust real-time detection of hydrogen peroxide in the rice blast fungus.

Kun Huang, Jeff Caplan, James A Sweigard, Kirk J Czymmek, Nicole M Donofrio

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Heme sensing and trafficking in fungi.Fungal biology reviews · 2023
    Article
  3. Article
  4. In Vivo Imaging with Genetically Encoded Redox Biosensors.International journal of molecular sciences · 2020
    Review
  5. Every Coin Has Two Sides: Reactive Oxygen Species during Rice⁻International journal of molecular sciences · 2019
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Kun HuangBioImaging Center, Delaware Biotechnology Institute, Newark, DE, 19716, USA.
Jeff CaplanBioImaging Center, Delaware Biotechnology Institute, Newark, DE, 19716, USA.
James A SweigardDuPont Stine Haskell Research Center, 1090 Elkton Rd, Newark, DE, 19711, USA.
Kirk J CzymmekZeiss, 1 Zeiss Dr., Thornwood, NY, 10594, USA.
Nicole M DonofrioDepartment of Plant and Soil Sciences, University of Delaware, Newark, DE, 19716, USA.
Biotechnology Institute · USCarl Zeiss (United States) · USDuPont (United States) · USUniversity of Delaware · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reactive oxygen species (ROS) production and breakdown have been studied in detail in plant-pathogenic fungi, including the rice blast fungus, Magnaporthe oryzae; however, the examination of the dynamic process of ROS production in real time has proven to be challenging. We resynthesized an existing ROS sensor, called HyPer, to exhibit optimized codon bias for fungi, specifically Neurospora crassa, and used a combination of microscopy and plate reader assays to determine whether this construct could detect changes in fungal ROS during the plant infection process. Using confocal microscopy, we were able to visualize fluctuating ROS levels during the formation of an appressorium on an artificial hydrophobic surface, as well as during infection on host leaves. Using the plate reader, we were able to ascertain measurements of hydrogen peroxide (H

Indexed as

Computer SystemsBiosensing TechniquesCodonHordeumHost SpecificityHydrogen PeroxideMagnaportheOryzaPlant DiseasesPlant LeavesReactive Oxygen SpeciesCodonHydrogen PeroxideReactive Oxygen Speciesappressoriumcodon biasconfocal imagingHyPer sensorMagnaporthe oryzaereactive oxygen speciesrice blast fungus

Identifiers

PMID26950262
PMCPMC6638257
OpenAlexW2296667234

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.