Evidence map›Paper›PMID 26949943›Full record

ArticlePloS one2016

Pyrosequencing the Midgut Transcriptome of the Banana Weevil Cosmopolites sordidus (Germar) (Coleoptera: Curculionidae) Reveals Multiple Protease-Like Transcripts.

Arnubio Valencia, Haichuan Wang, Alberto Soto, Manuel Aristizabal, Jorge W Arboleda, Seong-Il Eyun, Daniel D Noriega, Blair Siegfried

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Arnubio ValenciaDepartamento de Producción Agropecuaria, Universidad de Caldas, Manizales, Colombia.
Haichuan WangDepartment of Entomology, University of Nebraska, Lincoln, NE, 68583, United States of America.
Alberto SotoDepartamento de Producción Agropecuaria, Universidad de Caldas, Manizales, Colombia.
Manuel AristizabalDepartamento de Producción Agropecuaria, Universidad de Caldas, Manizales, Colombia.
Jorge W ArboledaUniversidad del Atlántico, Barranquilla, Colombia.
Seong-Il EyunCenter for Biotechnology, University of Nebraska, Lincoln, NE, 68588, United States of America.
Daniel D NoriegaPrograma de Biología, Universidad de Caldas, Manizales, Colombia.
Blair SiegfriedEntomology and Nematology Department, University of Florida, Gainesville, FL, 32611, United States of America.
University of Caldas · COUniversity of Nebraska–Lincoln · USUniversity of Atlántico · COUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The banana weevil Cosmopolites sordidus is an important and serious insect pest in most banana and plantain-growing areas of the world. In spite of the economic importance of this insect pest very little genomic and transcriptomic information exists for this species. In the present study, we characterized the midgut transcriptome of C. sordidus using massive 454-pyrosequencing. We generated over 590,000 sequencing reads that assembled into 30,840 contigs with more than 400 bp, representing a significant expansion of existing sequences available for this insect pest. Among them, 16,427 contigs contained one or more GO terms. In addition, 15,263 contigs were assigned an EC number. In-depth transcriptome analysis identified genes potentially involved in insecticide resistance, peritrophic membrane biosynthesis, immunity-related function and defense against pathogens, and Bacillus thuringiensis toxins binding proteins as well as multiple enzymes involved with protein digestion. This transcriptome will provide a valuable resource for understanding larval physiology and for identifying novel target sites and management approaches for this important insect pest.

Indexed as

Gene Expression ProfilingSequence AnalysisAnimalsDigestive SystemGene OntologyInsecticidesPeptide HydrolasesPhylogenyProteolysisRNA, MessengerSequence Homology, Nucleic AcidWeevilsXenobioticsInsecticidesPeptide HydrolasesRNA, MessengerXenobiotics

Identifiers

PMID26949943
PMCPMC4780788
OpenAlexW2293170514

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.