Evidence map›Paper›PMID 26949711›Full record

ArticleJournal of biological methods

Isolation and sequencing of active origins of DNA replication by nascent strand capture and release (NSCR).

Dimiter Kunnev, Amy Freeland, Maochun Qin, Jianmin Wang, Steven C Pruitt

Open access · diamondAbstract read
In one paragraph

Article in Journal of biological methods. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Dimiter KunnevDepartment of Molecular and Cellular Biology, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.
Amy FreelandDepartment of Molecular and Cellular Biology, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.
Maochun QinDepartment of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.
Jianmin WangDepartment of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.
Steven C PruittDepartment of Molecular and Cellular Biology, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.
Roswell Park Comprehensive Cancer Center · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Replication Licensing in Genome Stability, Cancer and AgingR01CA130995 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI KNUDSEN, ERIK · 2008 to 2022
$5.3M
Cell Proliferation in Genome and Tissue IntegrityR01AG041854 · NIA · ROSWELL PARK CANCER INSTITUTE CORP · PI PRUITT, STEVEN C · 2012 to 2016
$1.7M
NCI NIH HHS P30 CA016056NCI NIH HHS R01 CA130995NIA NIH HHS R01 AG041854
6 · The paper itself

Abstract

Nascent strand capture and release (NSCR) is a method for isolation of short nascent strands to identify origins of DNA replication. The protocol provided involves isolation of total DNA, denaturation, size fractionation on a sucrose gradient, 5'-biotinylation of the appropriate size nucleic acids, binding to a streptavidin coated magnetic beads, intensive washing, and specific release of only the RNA-containing chimeric nascent strand DNA using ribonuclease I (RNase I). The method has been applied to mammalian cells derived from proliferative tissues and cell culture but could be used for any system where DNA replication is primed by a small RNA resulting in chimeric RNA-DNA molecules.

Indexed as

DNA replicationNSCRorigin mappingribonuclease ISNS

Identifiers

PMID26949711
PMCPMC4778562
OpenAlexW2204884446

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.