Evidence map›Paper›PMID 26948279›Full record

ArticleGenes, brain, and behavior2016

Identification of quantitative trait loci and candidate genes for an anxiolytic-like response to ethanol in BXD recombinant inbred strains.

A H Putman, A R Wolen, J L Harenza, R K Yordanova, B T Webb, E J Chesler, M F Miles

Open access · bronzeAbstract read
In one paragraph

Article in Genes, brain, and behavior, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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  11. Glycogen synthase kinase 3 beta regulates ethanol consumption and is a risk factor for alcohol dependence.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

A H PutmanDepartment of Pharmacology and Toxicology, Virginia Commonwealth University, Richmond, VA, USA.
A R WolenDepartment of Psychiatry, Virginia Commonwealth University, Richmond, VA, USA.
J L HarenzaDepartment of Pharmacology and Toxicology, Virginia Commonwealth University, Richmond, VA, USA.
R K YordanovaInstitute of Mathematics and Informatics, Bulgarian Academy of Science, Sofia, Bulgaria.
B T WebbDepartment of Psychiatry, Virginia Commonwealth University, Richmond, VA, USA.
E J CheslerThe Jackson Laboratory, Bar Harbor, ME.
M F MilesDepartment of Pharmacology and Toxicology, Virginia Commonwealth University, Richmond, VA, USA.
Virginia Commonwealth University · USInstitute of Mathematics and Informatics · BGJackson Laboratory · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI Anna Karolina Palucka · 1985 to 2026
$61.9M
Project 5 - Genetic architecture of alcohol use disorder using cross-trait genetic correlations and public next-generation sequencing studiesP50AA022537 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI JILL C BETTINGER · 2014 to 2026
$19.6M
TRAINING IN THE PHARMACOLOGY OF ABUSED DRUGST32DA007027 · NIDA · VIRGINIA COMMONWEALTH UNIVERSITY · PI William L. Dewey · 1985 to 2026
$14.7M
Center for Clinical and Translational ResearchUL1TR000058 · NCATS · VIRGINIA COMMONWEALTH UNIVERSITY · PI MOELLER, FREDERICK GERARD · 2012 to 2015
$12.5M
Research Training: Psychiatric &Statistical GeneticsT32MH020030 · NIMH · VIRGINIA COMMONWEALTH UNIVERSITY · PI HERMINE H MAES, MICHAEL CHURTON NEALE · 1999 to 2026
$6.7M
Data Structures, Algorithms and Tools for Ontological DiscoveryR01AA018776 · NIAAA · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2010 to 2019
$3.9M
Of Mice and Primates: Gene Networks in Excessive Ethanol Consumption and AnxietyU01AA016667 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI MILES, MICHAEL F · 2007 to 2016
$2.4M
Project 3: Cross Species Characterization of Gene Networks in Acute ResponsesP20AA017828 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI KENDLER, KENNETH SEEDMAN, MILES, MICHAEL F · 2009 to 2012
$2.2M
Functional genomics of ethanol craving and naltrexoneR01AA014717 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI MILES, MICHAEL F · 2004 to 2008
$1.6M
Cross-species genetic analysis of ethanol-related behaviorR01AA020634 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI GROTEWIEL, MICHAEL S., MILES, MICHAEL F · 2012 to 2016
$1.3M
Genetic and genomic analysis of ethanol anxiolysisF31AA016052 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI PUTMAN, ALEXANDER H · 2005 to 2007
$64k
NCATS NIH HHS UL1 TR000058NCATS NIH HHS UL1TR000058NCI NIH HHS P30 CA034196NIAAA NIH HHS F31 AA016052NIAAA NIH HHS F31AA016052NIAAA NIH HHS P20 AA017828NIAAA NIH HHS P20AA017828NIAAA NIH HHS P50 AA022537NIAAA NIH HHS P50AA022537NIAAA NIH HHS R01 AA014717NIAAA NIH HHS R01AA014717NIAAA NIH HHS R01 AA018776NIAAA NIH HHS R01 AA020634NIAAA NIH HHS U01 AA016667NIAAA NIH HHS U01AA016667NIDA NIH HHS T32 DA007027NIDA NIH HHS T32DA007027NIMH NIH HHS T32 MH020030NIMH NIH HHS T32MH20030
6 · The paper itself

Abstract

Genetic differences in acute behavioral responses to ethanol contribute to the susceptibility to alcohol use disorder and the reduction of anxiety is a commonly reported motive underlying ethanol consumption among alcoholics. Therefore, we studied the genetic variance in anxiolytic-like responses to ethanol across the BXD recombinant inbred (RI) mouse panel using the light-dark transition model of anxiety. Strain-mean genetic mapping and a mixed-model quantitative trait loci (QTL) analysis replicated several previously published QTL for locomotor activity and identified several novel anxiety-related loci. Significant loci included a chromosome 11 saline anxiety-like QTL (Salanq1) and a chromosome 12 locus (Etanq1) influencing the anxiolytic-like response to ethanol. Etanq1 was successfully validated by studies with BXD advanced intercross strains and fine-mapped to a region comprising less than 3.5 Mb. Through integration of genome-wide mRNA expression profiles of the mesocorticolimbic reward circuit (prefrontal cortex, nucleus accumbens and ventral midbrain) across the BXD RI panel, we identified high priority candidate genes within Etanq1, the strongest of which was Ninein (Nin), a Gsk3β-interacting protein that is highly expressed in the brain.

Indexed as

Quantitative Trait LociAlcohol DrinkingAlcohol-Related DisordersAnimalsAnti-Anxiety AgentsChromosome MappingEthanolGenetic Association StudiesGenetic VariationMaleMiceAnti-Anxiety AgentsEthanolAnxietyBXD recombinant inbredethanolmicroarrayNineinQTL

Identifiers

PMID26948279
PMCPMC4852167
OpenAlexW2294907207

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.