Evidence map›Paper›PMID 26947514›Full record

ArticleThe Journal of molecular diagnostics : JMD2016

Preemptive Pharmacogenomic Testing for Precision Medicine: A Comprehensive Analysis of Five Actionable Pharmacogenomic Genes Using Next-Generation DNA Sequencing and a Customized CYP2D6 Genotyping Cascade.

Yuan Ji, Jennifer M Skierka, Joseph H Blommel, Brenda E Moore, Douglas L VanCuyk, Jamie K Bruflat, Lisa M Peterson, Tamra L Veldhuizen, Numrah Fadra, Sandra E Peterson and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed, 6 pooled it
31.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 6 syntheses or guidelines pooled it, 194 citations in OpenAlex.

  1. A systematic review of real-world evidence on the clinical relevance, characterization, and utility ofJournal of pharmacy & pharmaceutical sciences : a publication of the Canadian Society for Pharmaceutical Sciences, Societe canadienne des sciences pharmaceutiques · 2025
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  5. Systematic review of the evidence on the cost-effectiveness of pharmacogenomics-guided treatment for cardiovascular diseases.Genetics in medicine : official journal of the American College of Medical Genetics · 2020
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  10. Evaluating genotype-treatment interactions for high-risk medications in British general practice: a retrospective cohort study using UK Biobank.The British journal of general practice : the journal of the Royal College of General Practitioners · 2026
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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Yuan JiDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Jennifer M SkierkaDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Joseph H BlommelDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Brenda E MooreDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Douglas L VanCuykDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Jamie K BruflatDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Lisa M PetersonDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Tamra L VeldhuizenCenter for Individualized Medicine, Mayo Clinic, Rochester, Minnesota.
Numrah FadraDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.
Sandra E PetersonDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Susan A LagerstedtDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Laura J TrainDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Linnea M BaudhuinDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Eric W KleeDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota; Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota.
Matthew J FerberDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota; Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota.
Suzette J BielinskiDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.
Pedro J CaraballoDepartment of General Internal Medicine, Mayo Clinic, Rochester, Minnesota.
Richard M WeinshilboumCenter for Individualized Medicine, Mayo Clinic, Rochester, Minnesota; Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota.
John L BlackDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota. Electronic address: black.john@mayo.edu.
Mayo Clinic · USMayo Clinic in Florida · US

Funding

Genomic Basis of Susceptibility to COVID-19 Infection and its ComplicationsU01HG006379 · NHGRI · MAYO CLINIC ROCHESTER · PI Richard R. Sharp · 2011 to 2026
$16.5M
Pharmacogenetics of Phase II Drug Metabolizing EnzymesU19GM061388 · NIGMS · MAYO CLINIC ROCHESTER · PI WANG, LIEWEI, WEINSHILBOUM, RICHARD M. · 2010 to 2014
$15.8M
Rochester Epidemiology ProjectR01AG034676 · NIA · MAYO CLINIC ROCHESTER · PI ROCCA, WALTER A, ST SAUVER, JENNIFER LYNN · 2010 to 2019
$9.5M
INHERITED VARIATIONS IN DRUG-METABOLIZING ENZYMESR01GM028157 · NIGMS · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 1985 to 2019
$6.9M
Pharmacogenomics of Breast Cancer Adjuvant ChemotherapyU01HG005137 · NHGRI · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 2009 to 2011
$2.1M
Pharmacogenomics and Mechanisms of Cytidine AnaloguesR01CA138461 · NCI · MAYO CLINIC ROCHESTER · PI WANG, LIEWEI · 2009 to 2013
$1.5M
NCI NIH HHS R01 CA138461NHGRI NIH HHS U01 HG005137NHGRI NIH HHS U01 HG006379NIA NIH HHS R01 AG034676NIGMS NIH HHS R01 GM028157NIGMS NIH HHS U19 GM061388
6 · The paper itself

Abstract

Significant barriers, such as lack of professional guidelines, specialized training for interpretation of pharmacogenomics (PGx) data, and insufficient evidence to support clinical utility, prevent preemptive PGx testing from being widely clinically implemented. The current study, as a pilot project for the Right Drug, Right Dose, Right Time-Using Genomic Data to Individualize Treatment Protocol, was designed to evaluate the impact of preemptive PGx and to optimize the workflow in the clinic setting. We used an 84-gene next-generation sequencing panel that included SLCO1B1, CYP2C19, CYP2C9, and VKORC1 together with a custom-designed CYP2D6 testing cascade to genotype the 1013 subjects in laboratories approved by the Clinical Laboratory Improvement Act. Actionable PGx variants were placed in patient's electronic medical records where integrated clinical decision support rules alert providers when a relevant medication is ordered. The fraction of this cohort carrying actionable PGx variant(s) in individual genes ranged from 30% (SLCO1B1) to 79% (CYP2D6). When considering all five genes together, 99% of the subjects carried an actionable PGx variant(s) in at least one gene. Our study provides evidence in favor of preemptive PGx testing by identifying the risk of a variant being present in the population we studied.

Indexed as

GenotypeHigh-Throughput Nucleotide SequencingAllelesCytochrome P-450 CYP2C19Cytochrome P-450 CYP2D6Enzyme ActivationGene DuplicationHumansPharmacogeneticsPhenotypePrecision MedicineCytochrome P-450 CYP2C19Cytochrome P-450 CYP2D6

Identifiers

PMID26947514
PMCPMC4851731
OpenAlexW2288260410

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.