ArticleNature communications2016
Data publication with the structural biology data grid supports live analysis.
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Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.
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80citing papers in PubMed
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Who cites it
80 citing papers in PubMed.
- Protein Data Bank Japan: Computational Resources for Analysis of Protein Structures.Journal of molecular biology · 2025Article
- Structural Basis of Regioselective Bromination of Tricyclic Tryptoline by the Tryptophan Halogenase Thal.Chembiochem : a European journal of chemical biology · 2025Article
- Accelerating structural dynamics through integrated research informatics.Structural dynamics (Melville, N.Y.) · 2025Article
- Modeling Protein-Glycan Interactions with HADDOCK.Journal of chemical information and modeling · 2024Article
- Towards the accurate modelling of antibody-antigen complexes from sequence using machine learning and information-driven docking.Bioinformatics (Oxford, England) · 2024Article
- The evolution of raw data archiving and the growth of its importance in crystallography.IUCrJ · 2024Article
- Article
- Introduction of the Capsules environment to support further growth of the SBGrid structural biology software collection.Acta crystallographica. Section D, Structural biology · 2024Article
- DeepRank-GNN-esm: a graph neural network for scoring protein-protein models using protein language model.Bioinformatics advances · 2024Article
- Pathogen-specific structural features ofmBio · 2023Article
- Membrane recruitment of the polarity protein Scribble by the cell adhesion receptor TMIGD1.Communications biology · 2023Article
- Scribble scrambles parathyroid hormone receptor interactions to regulate phosphate and vitamin D homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2023Article
- Crocodile defensin (CpoBD13) antifungal activity via pH-dependent phospholipid targeting and membrane disruption.Nature communications · 2023Article
- Structural insight into the Scribble PDZ domains interaction with the oncogenic Human T-cell lymphotrophic virus-1 (HTLV-1) Tax1 PBM.The FEBS journal · 2023Article
- Self-recycling and partially conservative replication of mycobacterial methylmannose polysaccharides.Communications biology · 2023Article
- Molecular basis for integrin adhesion receptor binding to p21-activated kinase 4 (PAK4).Communications biology · 2022Article
- Crystal Structures of Epstein-Barr Virus Bcl-2 Homolog BHRF1 Bound to Bid and Puma BH3 Motif Peptides.Viruses · 2022Article
- Molecular basis of Tick Born encephalitis virus NS5 mediated subversion of apico-basal cell polarity signalling.The Biochemical journal · 2022Article
- Structural Insight into KsBcl-2 Mediated Apoptosis Inhibition by Kaposi Sarcoma Associated Herpes Virus.Viruses · 2022Article
- Structural Basis of the Avian Influenza NS1 Protein Interactions with the Cell Polarity Regulator Scribble.Viruses · 2022Article
20 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
70 authors.
Peter A MeyerDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Stephanie SociasDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Jason KeyDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Elizabeth RanseyDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Emily C TjonDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Alejandro BuschiazzoLaboratory of Molecular &Structural Microbiology, Institut Pasteur de Montevideo, Montevideo 11400, Uruguay.
Ming LeiInstitute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
Chris BotkaHarvard Medical School, Boston, Massachusetts 02115, USA.
James WithrowNE-CAT and Department of Chemistry and Chemical Biology, Cornell University, Building 436E, Argonne National Laboratory, 9700S. Cass Avenue, Argonne, Illinois 60439, USA.
David NeauNE-CAT and Department of Chemistry and Chemical Biology, Cornell University, Building 436E, Argonne National Laboratory, 9700S. Cass Avenue, Argonne, Illinois 60439, USA.
Kanagalaghatta RajashankarNE-CAT and Department of Chemistry and Chemical Biology, Cornell University, Building 436E, Argonne National Laboratory, 9700S. Cass Avenue, Argonne, Illinois 60439, USA.
Karen S AndersonDepartments of Pharmacology and Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Richard H BaxterDepartment of Chemistry, Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520, USA.
Stephen C BlacklowDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Titus J BoggonDepartments of Pharmacology and Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Alexandre M J J BonvinBijvoet Center, Faculty of Science, Utrecht University, 3584 CH Utrecht, The Netherlands.
Dominika BorekDepartments of Biophysics and Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Tom J BrettDepartment of Internal Medicine, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Amedeo CaflischDepartment of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland.
Chung-I ChangInstitute of Biological Chemistry, Academia Sinica, Taipei 11529, Taiwan.
Walter J ChazinDepartments of Biochemistry and Chemistry, Center for Structural Biology, Vanderbilt University, Nashville, Tennessee 37232, USA.
Kevin D CorbettLudwig Institute for Cancer Research, San Diego Branch, La Jolla, California 92093, USA.
Michael S CosgroveDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, New York 13210, USA.
Sean CrossonDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Sirano Dhe-PaganonDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.
Enrico Di CeraEdward A. Doisy Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St Louis, Missouri 63104, USA.
Catherine L DrennanDepartments of Chemistry and Biology and the Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Michael J EckDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Brandt F EichmanDepartment of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee 37235, USA.
Qing R FanDepartments of Pharmacology and Pathology and Cell Biology, Columbia University, New York, New York 10032, USA.
Adrian R Ferré-D'AmaréLaboratory of RNA Biophysics, National Heart, Lung and Blood Institute, NIH, Bethesda, Maryland 20892, USA.
J Christopher FrommeDepartment of Molecular Biology and Genetics, Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, New York 14853, USA.
K Christopher GarciaHoward Hughes Medical Institute, Stanford University School of Medicine, Stanford, California 94305, USA.
Rachelle GaudetDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Peng GongKey Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China.
Stephen C HarrisonDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Ekaterina E HeldweinDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.
Zongchao JiaDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada K7M 3G5.
Robert J KeenanDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Andrew C KruseDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Marc KvansakulDepartment of Biochemistry and Genetics, La Trobe University, Melbourne, Victoria 3086, Australia.
Jason S McLellanDepartment of Biochemistry, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire 03755, USA.
Yorgo ModisDepartment of Medicine, University of Cambridge, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.
Yunsun NamUniversity of Texas, Southwestern Medical Center, Dallas, Texas 75390, USA.
Zbyszek OtwinowskiDepartments of Biophysics and Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Emil F PaiDepartments of Biochemistry, Medical Biophysics and Molecular Genetics, University of Toronto, Toronto, Ontario, Canada M5S 1A8.
Pedro José Barbosa PereiraIBMC-Instituto de Biologia Molecular e Celular and Instituto de Investigação e Inovação em Saúde, Universidade do Porto, 4150 Porto, Portugal.
Carlo PetosaUniversité Grenoble Alpes/CNRS/CEA, Institut de Biologie Structurale, 38027 Grenoble, France.
C S RamanDepartment of Pharmaceutical Sciences, University of Maryland, Baltimore, Maryland 21201, USA.
Tom A RapoportHoward Hughes Medical Institute and Harvard Medical School, Department of Cell Biology, Boston, Massachusetts 02115, USA.
Antonina Roll-MecakCell Biology and Biophysics Unit, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, Bethesda, Maryland 20892, USA.
Michael K RosenDepartment of Biophysics and Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Gabby RudenkoDepartment of Pharmacology and Toxicology, Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, Texas 77555, USA.
Joseph SchlessingerDepartment of Pharmacology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Thomas U SchwartzDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Yousif ShamooDepartment of BioSciences, Rice University, Houston, Texas 77005, USA.
Holger SondermannDepartment of Molecular Medicine, College of Veterinary Medicine, Cornell University, Ithaca, New York 14853, USA.
Yizhi J TaoDepartment of BioSciences, Rice University, Houston, Texas 77005, USA.
Niraj H ToliaDepartment of Molecular Microbiology, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Oleg V TsodikovDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, Kentucky 40536, USA.
Kenneth D WestoverDepartments of Biochemistry and Radiation Oncology, University of Texas, Southwestern Medical Center, Dallas, Texas 75390, USA.
Hao WuDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Ian FosterMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, and Department of Computer Science, University of Chicago, Chicago, Illinois 60637, USA.
James S FraserDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, California 94158, USA.
Filipe R N C MaiaLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-751 24 Uppsala, Sweden.
Tamir GonenJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147 USA.
Tom KirchhausenProgram in Cellular and Molecular Medicine and Department of Pediatrics, Boston Children's Hospital, Boston, Massachusetts 02115, USA.
Kay DiederichsDepartment of Biology, University of Konstanz, D-78457 Konstanz, Germany.
Mercè CrosasInstitute for Quantitative Social Science, Harvard University, Cambridge, Massachusetts, 02138, USA.
Piotr SlizDepartment of Biological Chemistry and Molecular Pharmacology, Boston, Massachusetts 02115, USA.
Funding
Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5MRNA: Structure, Biophysics and PhysiologyZIAHL006102 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI FERRÉ-D'AMARÉ, ADRIAN · 2011 to 2025
$14.6MOverall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3MTrainingU54EB020406 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TOGA, ARTHUR W · 2014 to 2018
$12.5MMechanisms of molecular machines that regulate the neuronal cytoskeletonZIANS003122 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI ROLL-MECAK, ANTONINA · 2010 to 2016
$9.9MTranslational Research Skills Development CoreU54HL112303 · NHLBI · WASHINGTON UNIVERSITY · PI SADLER, J EVAN · 2012 to 2016
$8.8MSynaptic Organizers: Dynamic Regulation of Trans-synaptic BridgesR01MH077303 · NIMH · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Gabrielle Rudenko · 2006 to 2026
$8.2MMOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9MX-RAY CRYSTALLOGRAPHY OF MACROMOLECULESR01GM053163 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MINOR, WLADEK, OTWINOWSKI, ZBYSZEK · 1996 to 2014
$6.3MStructural Studies of TNF Receptor Associated Factors (TRAFs)R01AI045937 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI WU, HAO · 1999 to 2016
$5.9MMolecular Basis of Tail-Anchored Membrane Protein Targeting - Equip SupplR01GM086487 · NIGMS · UNIVERSITY OF CHICAGO · PI KEENAN, ROBERT J · 2010 to 2021
$4.8MTechnology CoreU19AI107792 · NIAID · UNIVERSITY OF CHICAGO · PI SCHNEEWIND, OLAF · 2013 to 2017
$4.3MHoward Hughes Medical InstituteNCRR NIH HHS 1S10RR028832NCRR NIH HHS S10 RR028832NIBIB NIH HHS NIH 1U54EB020406-01NIBIB NIH HHS U54 EB020406NIGMS NIH HHS NIH P41 GM103403NIGMS NIH HHS P41 GM103403Wellcome Trust 101908/Z/13/Z
Abstract
Access to experimental X-ray diffraction image data is fundamental for validation and reproduction of macromolecular models and indispensable for development of structural biology processing methods. Here, we established a diffraction data publication and dissemination system, Structural Biology Data Grid (SBDG; data.sbgrid.org), to preserve primary experimental data sets that support scientific publications. Data sets are accessible to researchers through a community driven data grid, which facilitates global data access. Our analysis of a pilot collection of crystallographic data sets demonstrates that the information archived by SBDG is sufficient to reprocess data to statistics that meet or exceed the quality of the original published structures. SBDG has extended its services to the entire community and is used to develop support for other types of biomedical data sets. It is anticipated that access to the experimental data sets will enhance the paradigm shift in the community towards a much more dynamic body of continuously improving data analysis.
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Databases, GeneticPublicationsCrystallography, X-RayInternetMacromolecular SubstancesSoftwareMacromolecular Substances
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