Evidence map›Paper›PMID 26947098›Full record

ArticleMolecular and cellular neurosciences2016

Lysine-specific demethylase-1 (LSD1) is compartmentalized at nuclear chromocenters in early post-mitotic cells of the olfactory sensory neuronal lineage.

Seda Kilinc, Alyssa Savarino, Julie H Coleman, James E Schwob, Robert P Lane

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular neurosciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Seda KilincDepartment of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06457, USA. Electronic address: skilinc@wesleyan.edu.
Alyssa SavarinoDepartment of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06457, USA.
Julie H ColemanDepartment of Developmental, Molecular and Chemical Biology, Tufts University School of Medicine, Boston, MA 02111, USA.
James E SchwobDepartment of Developmental, Molecular and Chemical Biology, Tufts University School of Medicine, Boston, MA 02111, USA.
Robert P LaneDepartment of Molecular Biology and Biochemistry, Wesleyan University, Middletown, CT 06457, USA. Electronic address: rlane@wesleyan.edu.
Wesleyan University · USTufts University · US

Funding

REGULATION OF NEUROGENESIS IN OLFACTORY EPITHELIUMR01DC002167 · NIDCD · UPSTATE MEDICAL UNIVERSITY · PI SCHWOB, JAMES E. · 1994 to 2016
$5.2M
Pheromone Receptor Genomic Evolution and Gene RegulationR01DC006267 · NIDCD · WESLEYAN UNIVERSITY · PI LANE, ROBERT P. · 2003 to 2014
$3.6M
NIDCD NIH HHS R01 DC002167NIDCD NIH HHS R01 DC006267
6 · The paper itself

Abstract

Mammalian olfaction depends on the development of specialized olfactory sensory neurons (OSNs) that each express one odorant receptor (OR) protein from a large family of OR genes encoded in the genome. The lysine-specific demethylase-1 (LSD1) protein removes activating H3K4 or silencing H3K9 methylation marks at gene promoters and is required for proper OR regulation. We show that LSD1 protein exhibits variable organization within nuclei of developing OSNs, and tends to consolidate into a single dominant compartment at the edges of chromocenters within nuclei of early post-mitotic cells of the mouse olfactory epithelium (MOE). Using an immortalized cell line derived from developing olfactory placode, we show that consolidation of LSD1 appears to be cell-cycle regulated, with a peak occurrence in early G1. LSD1 co-compartmentalizes with CoREST, a protein known to collaborate with LSD1 to carry out a variety of chromatin-modifying functions. We show that LSD1 compartments co-localize with 1-3 OR loci at the exclusion of most OR genes, and commonly associate with Lhx2, a transcription factor involved in OR regulation. Together, our data suggests that LSD1 is sequestered into a distinct nuclear space that might restrict a histone-modifying function to a narrow developmental time window and/or range of OR gene targets.

Indexed as

G1 PhaseAnimalsCell LineCell LineageCell NucleusChromatinCo-Repressor ProteinsHistone DemethylasesHistonesMiceMitosisNerve Tissue ProteinsOlfactory Receptor NeuronsProtein BindingReceptors, OdorantRepressor ProteinsChromatinCo-Repressor ProteinsHistone DemethylasesHistonesKDM1a protein, mouseNerve Tissue ProteinsRcor2 protein, mouseReceptors, OdorantRepressor ProteinsChromocentersCompartmentalizationH3K9 methylationLSD1/KDM1ANeurogeninOlfactory receptor genesp27(Kip1)

Identifiers

PMID26947098
PMCPMC4935602
OpenAlexW2289540287

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.