Evidence map›Paper›PMID 26946939›Full record

ArticleScientific reports2016

Mechanisms involved in xyloglucan catabolism by the cellulosome-producing bacterium Ruminiclostridium cellulolyticum.

Julie Ravachol, Pascale de Philip, Romain Borne, Pascal Mansuelle, María J Maté, Stéphanie Perret, Henri-Pierre Fierobe

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 109 citations in OpenAlex.

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  15. Spatial Variation ofPlants (Basel, Switzerland) · 2021
    Article
  16. Engineering of a newMetabolic engineering communications · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Julie RavacholAix-Marseille Université-CNRS, Laboratoire de Chimie Bactérienne, UMR7283, IMM, 31 chemin Joseph Aiguier, F-13402 Marseille, France.
Pascale de PhilipAix-Marseille Université-CNRS, Laboratoire de Chimie Bactérienne, UMR7283, IMM, 31 chemin Joseph Aiguier, F-13402 Marseille, France.
Romain BorneAix-Marseille Université-CNRS, Laboratoire de Chimie Bactérienne, UMR7283, IMM, 31 chemin Joseph Aiguier, F-13402 Marseille, France.
Pascal MansuellePlate-forme de Protéomique, IMM, 31 chemin Joseph Aiguier, F-13402 Marseille, France.
María J MatéAix-Marseille Université-CNRS, Laboratoire d'Architecture et Fonction des Macromolécules Biologiques, UMR7257, Parc Technologique de Luminy, F-13288 Marseille, France.
Stéphanie PerretAix-Marseille Université-CNRS, Laboratoire de Chimie Bactérienne, UMR7283, IMM, 31 chemin Joseph Aiguier, F-13402 Marseille, France.
Henri-Pierre FierobeAix-Marseille Université-CNRS, Laboratoire de Chimie Bactérienne, UMR7283, IMM, 31 chemin Joseph Aiguier, F-13402 Marseille, France.
Institut de Microbiologie de la Méditerranée · FRLaboratoire de Chimie Bactérienne · FRArchitecture et Fonction des Macromolécules Biologiques · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xyloglucan, a ubiquitous highly branched plant polysaccharide, was found to be rapidly degraded and metabolized by the cellulosome-producing bacterium Ruminiclostridium cellulolyticum. Our study shows that at least four cellulosomal enzymes displaying either endo- or exoxyloglucanase activities, achieve the extracellular degradation of xyloglucan into 4-glucosyl backbone xyloglucan oligosaccharides. The released oligosaccharides (composed of up to 9 monosaccharides) are subsequently imported by a highly specific ATP-binding cassette transporter (ABC-transporter), the expression of the corresponding genes being strongly induced by xyloglucan. This polysaccharide also triggers the synthesis of cytoplasmic β-galactosidase, α-xylosidase, and β-glucosidase that act sequentially to convert the imported oligosaccharides into galactose, xylose, glucose and unexpectedly cellobiose. Thus R. cellulolyticum has developed an energy-saving strategy to metabolize this hemicellulosic polysaccharide that relies on the action of the extracellular cellulosomes, a highly specialized ABC-transporter, and cytoplasmic enzymes acting in a specific order. This strategy appears to be widespread among cellulosome-producing mesophilic bacteria which display highly similar gene clusters encoding the cytosolic enzymes and the ABC-transporter.

Indexed as

ATP-Binding Cassette TransportersBacterial ProteinsCellulasesCellulosomesCytoplasmEubacterialesGlucansSubstrate SpecificityXylansATP-Binding Cassette TransportersBacterial ProteinsCellulasesGlucansXylansxyloglucan

Identifiers

PMID26946939
PMCPMC4780118
OpenAlexW2308149752

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.