Evidence map›Paper›PMID 26946124›Full record

ArticleJournal of experimental botany2016

Root spatial metabolite profiling of two genotypes of barley (Hordeum vulgare L.) reveals differences in response to short-term salt stress.

Megan C Shelden, Daniel A Dias, Nirupama S Jayasinghe, Antony Bacic, Ute Roessner

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
32.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 137 citations in OpenAlex.

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  11. Plant Metabolomics: Current Initiatives and Future Prospects.Current issues in molecular biology · 2023
    Review
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  20. The Role ofBiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Megan C SheldenAustralian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond SA 5064, Australia megan.shelden@adelaide.edu.au.
Daniel A DiasMetabolomics Australia, The University of Melbourne, Parkville VIC 3010, Australia.
Nirupama S JayasingheMetabolomics Australia, The University of Melbourne, Parkville VIC 3010, Australia.
Antony BacicMetabolomics Australia, The University of Melbourne, Parkville VIC 3010, Australia ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Parkville VIC 3010, Australia.
Ute RoessnerMetabolomics Australia, The University of Melbourne, Parkville VIC 3010, Australia School of BioSciences, The University of Melbourne, Parkville VIC 3010, Australia.
Melbourne Genomics Health Alliance · AUAustralian Centre for Plant Functional Genomics · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Barley (Hordeum vulgare L.) is the most salt-tolerant cereal crop and has excellent genetic and genomic resources. It is therefore a good model to study salt-tolerance mechanisms in cereals. We aimed to determine metabolic differences between a cultivated barley, Clipper (tolerant), and a North African landrace, Sahara (susceptible), previously shown to have contrasting root growth phenotypes in response to the early phase of salinity stress. GC-MS was used to determine spatial changes in primary metabolites in barley roots in response to salt stress, by profiling three different regions of the root: root cap/cell division zone (R1), elongation zone (R2), and maturation zone (R3). We identified 76 known metabolites, including 29 amino acids and amines, 20 organic acids and fatty acids, and 19 sugars and sugar phosphates. The maintenance of cell division and root elongation in Clipper in response to short-term salt stress was associated with the synthesis and accumulation of amino acids (i.e. proline), sugars (maltose, sucrose, xylose), and organic acids (gluconate, shikimate), indicating a potential role for these metabolic pathways in salt tolerance and the maintenance of root elongation. The processes involved in root growth adaptation and the underlying coordination of metabolic pathways appear to be controlled in a region-specific manner. This study highlights the importance of utilizing spatial profiling and will provide us with a better understanding of abiotic stress response(s) in plants at the tissue and cellular level.

Indexed as

Salt ToleranceCalcium ChlorideGenotypeHordeumPlant RootsSodium ChlorideStress, PhysiologicalCalcium ChlorideSodium ChlorideCell divisioncerealgas chromatography–mass spectrophotometrymetabolomicsosmotic stressroot elongationroot growthsalinity.

Identifiers

PMID26946124
PMCPMC4896359
OpenAlexW2301033953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.