Evidence map›Paper›PMID 26944553›Full record

ReviewArchives of biochemistry and biophysics2016

Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography.

Christopher O Barnes, Elena G Kovaleva, Xiaofeng Fu, Hilary P Stevenson, Aaron S Brewster, Daniel P DePonte, Elizabeth L Baxter, Aina E Cohen, Guillermo Calero

Open access · greenAbstract readReview
In one paragraph

Review in Archives of biochemistry and biophysics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. MicroED Sample Preparation and Data Collection For Protein Crystals.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  5. Detection of Microcrystals for CryoEM.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  6. Review
  7. Article
  8. Strategies for sample delivery for femtosecond crystallography.Acta crystallographica. Section D, Structural biology · 2019
    Review
  9. Article
  10. Article
  11. MicroED Structure of AuThe journal of physical chemistry letters · 2017
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Christopher O Barnes *Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
Elena G Kovaleva *Stanford Synchrotron Radiation Lightsource, Menlo Park, CA 94025, USA.
Xiaofeng FuDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
Hilary P StevensonDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
Aaron S BrewsterMolecular Biophysics & Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Daniel P DePonteLinac Coherent Light Source, Menlo Park, CA 94025, USA.
Elizabeth L BaxterStanford Synchrotron Radiation Lightsource, Menlo Park, CA 94025, USA.
Aina E CohenStanford Synchrotron Radiation Lightsource, Menlo Park, CA 94025, USA.
Guillermo CaleroDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
University of Pittsburgh · USStanford Synchrotron Radiation Lightsource · USLawrence Berkeley National Laboratory · USLinac Coherent Light Source · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Structural Studies of RNA Polymerase II Transcription Initiation and ElongationR01GM112686 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CALERO, GUILLERMO ALBERTO · 2015 to 2024
$2.8M
Structural and Functional Mechanisms of PTH-Receptor SignalingR01DK102495 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CALERO, GUILLERMO ALBERTO, GARDELLA, THOMAS J · 2014 to 2017
$2.0M
Towards real-time XFEL data reduction with CCTBXR01GM102520 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2012 to 2015
$1.4M
The roles of TFIIB and TFIIF in transcription by DNA-directed RNA Polymerase IIF31GM112497 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BARNES, CHRISTOPHER O'NEIL · 2015 to 2015
$43k
NIDDK NIH HHS R01 DK102495NIGMS NIH HHS F31 GM112497NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM102520NIGMS NIH HHS R01 GM112686
6 · The paper itself

Abstract

Serial femtosecond crystallography (SFX) employing high-intensity X-ray free-electron laser (XFEL) sources has enabled structural studies on microcrystalline protein samples at non-cryogenic temperatures. However, the identification and optimization of conditions that produce well diffracting microcrystals remains an experimental challenge. Here, we report parallel SFX and transmission electron microscopy (TEM) experiments using fragmented microcrystals of wild type (WT) homoprotocatechuate 2,3-dioxygenase (HPCD) and an active site variant (H200Q). Despite identical crystallization conditions and morphology, as well as similar crystal size and density, the indexing efficiency of the diffraction data collected using the H200Q variant sample was over 7-fold higher compared to the diffraction results obtained using the WT sample. TEM analysis revealed an abundance of protein aggregates, crystal conglomerates and a smaller population of highly ordered lattices in the WT sample as compared to the H200Q variant sample. While not reported herein, the 1.75 Å resolution structure of the H200Q variant was determined from ∼16 min of beam time, demonstrating the utility of TEM analysis in evaluating sample monodispersity and lattice quality, parameters critical to the efficiency of SFX experiments.

Indexed as

CrystallizationCrystallographyMaterials TestingMicroscopy, Electron, TransmissionProteinsProteinsLiquid-jet injectorSerial femtosecond crystallographyTransmission electron microscopyX-ray free electron laser

Identifiers

PMID26944553
PMCPMC5215478
OpenAlexW2292523422

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.