Evidence map›Paper›PMID 26944410›Full record

ArticleBMC genomics2016

A new allele for aluminium tolerance gene in barley (Hordeum vulgare L.).

Yanling Ma, Chengdao Li, Peter R Ryan, Sergey Shabala, Jianfeng You, Jie Liu, Chunji Liu, Meixue Zhou

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
10.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 78 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Genetic architecture of AlEcotoxicology (London, England) · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yanling MaTasmanian Institute of Agriculture and School of Land and Food, University of Tasmania, P.O. Box 46, Kings Meadows, TAS, 7249, Australia. Yanling.ma@utas.edu.au.
Chengdao LiWestern Barley Genetics Alliance, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia. Chengdao.Li@agric.wa.gov.au.
Peter R RyanCSIRO Agriculture, GPO Box 1600, Canberra, ACT, 2601, Australia. Peter.Ryan@csiro.au.
Sergey ShabalaTasmanian Institute of Agriculture and School of Land and Food, University of Tasmania, P.O. Box 46, Kings Meadows, TAS, 7249, Australia. Sergey.shabala@utas.edu.au.
Jianfeng YouCSIRO Agriculture, GPO Box 1600, Canberra, ACT, 2601, Australia. Jiangfeng.You@csiro.au.
Jie LiuTasmanian Institute of Agriculture and School of Land and Food, University of Tasmania, P.O. Box 46, Kings Meadows, TAS, 7249, Australia. Jie.Liu2@csiro.au.
Chunji LiuCSIRO Agriculture, 306 Carmody Road, St Lucia, QLD, 4067, Australia. Chunji.Liu@csiro.au.
Meixue ZhouTasmanian Institute of Agriculture and School of Land and Food, University of Tasmania, P.O. Box 46, Kings Meadows, TAS, 7249, Australia. mzhou@utas.edu.au.
Commonwealth Scientific and Industrial Research Organisation · AUUniversity of Tasmania · AUMurdoch University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAluminium (Al) toxicity is the main factor limiting the crop production in acid soils and barley (Hordeum vulgare L.) is one of the most Al-sensitive of the small-grained cereals. The major gene for Al tolerance in barley is HvAACT1 (HvMATE) on chromosome 4H which encodes a multidrug and toxic compound extrusion (MATE) protein. The HvAACT1 protein facilitates the Al-activated release of citrate from root apices which protects the growing cells and enables root elongation to continue. A 1 kb transposable element-like insert in the 5' untranslated region (UTR) of HvAACT1 is associated with increased gene expression and tolerance and a PCR-based marker is available to score for this insertion.

resultsWe screened a wide range of barley genotypes for Al tolerance and identified a moderately tolerant Chinese genotype named CXHKSL which did not show the typical allele in the 5' UTR of HvAACT1 associated with tolerance. We investigated the mechanism of Al tolerance in CXHKSL and concluded it also relies on the Al-activated release of citrate from roots. Quantitative trait loci (QTL) analysis of double haploid lines generated with CXHKSL and the Al-sensitive variety Gairdner mapped the tolerance locus to the same region as HvAACT1 on chromosome 4H.

conclusionsOur results show that the Chinese barley genotype CXHKSL possesses a novel allele of the major Al tolerance gene HvAACT1.

Indexed as

Alleles5' Untranslated RegionsAluminumCitric AcidDNA, PlantDNA Transposable ElementsGene Expression Regulation, PlantGenotypeHordeumMalatesPlant ProteinsPlant RootsQuantitative Trait LociSequence Analysis, DNA5' Untranslated RegionsAluminumCitric AcidDNA, PlantDNA Transposable ElementsMalatesmalic acidPlant Proteins

Identifiers

PMID26944410
PMCPMC4779196
OpenAlexW2291103376

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.