Evidence map›Paper›PMID 26944088›Full record

ArticleAmerican journal of physiology. Lung cellular and molecular physiology2016

Flow-cytometric method for simultaneous analysis of mouse lung epithelial, endothelial, and hematopoietic lineage cells.

Benjamin D Singer, Jason R Mock, Franco R D'Alessio, Neil R Aggarwal, Pooja Mandke, Laura Johnston, Mahendra Damarla

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Lung cellular and molecular physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 69 citations in OpenAlex.

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  15. Lipid nanoparticle-mediated mRNA delivery in lung fibrosis.European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Benjamin D SingerJohns Hopkins University Division of Pulmonary and Critical Care Medicine, Baltimore, Maryland benjamin-singer@northwestern.edu.ORCID 0000-0001-5775-8427
Jason R MockJohns Hopkins University Division of Pulmonary and Critical Care Medicine, Baltimore, Maryland.
Franco R D'AlessioJohns Hopkins University Division of Pulmonary and Critical Care Medicine, Baltimore, Maryland.
Neil R AggarwalJohns Hopkins University Division of Pulmonary and Critical Care Medicine, Baltimore, Maryland.
Pooja MandkeJohns Hopkins University Division of Pulmonary and Critical Care Medicine, Baltimore, Maryland.
Laura JohnstonJohns Hopkins University Division of Pulmonary and Critical Care Medicine, Baltimore, Maryland.
Mahendra DamarlaJohns Hopkins University Division of Pulmonary and Critical Care Medicine, Baltimore, Maryland.
Johns Hopkins University · US

Funding

Application of Omics in Lung DiseaseK12HL119998 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOERSCHUK, CLAIRE M · 2013 to 2017
$1.4M
MAP Kinase Signaling in Apoptosis-Induced Ventilator-Associated Lung InjuryK08HL097024 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI DAMARLA, MAHENDRA · 2009 to 2013
$805k
Regulatory T cell Uhrf1 and DNA methylation in repair of acute lung injuryK08HL128867 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SINGER, BENJAMIN DAVID · 2015 to 2019
$779k
Regulatory T Cells Promote Alveolar Epithelial RepairK08HL129075 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MOCK, JASON ROBERT · 2016 to 2019
$685k
Epigenetic Regulation of Acute Lung Injury ResolutionF32HL120400 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI SINGER, BENJAMIN DAVID · 2013 to 2014
$113k
NHLBI NIH HHS F32 HL120400NHLBI NIH HHS K08 HL097024NHLBI NIH HHS K08 HL128867NHLBI NIH HHS K08 HL129075NHLBI NIH HHS K12 HL119998
6 · The paper itself

Abstract

Flow cytometry is a powerful tool capable of simultaneously analyzing multiple parameters on a cell-by-cell basis. Lung tissue preparation for flow cytometry requires creation of a single-cell suspension, which often employs enzymatic and mechanical dissociation techniques. These practices may damage cells and cause cell death that is unrelated to the experimental conditions under study. We tested methods of lung tissue dissociation and sought to minimize cell death in the epithelial, endothelial, and hematopoietic lineage cellular compartments. A protocol that involved flushing the pulmonary circulation and inflating the lung with Dispase, a bacillus-derived neutral metalloprotease, at the time of tissue harvest followed by mincing, digestion in a DNase and collagenase solution, and filtration before staining with fluorescent reagents concurrently maximized viable yields of epithelial, endothelial, and hematopoietic lineage cells compared with a standard method that did not use enzymes at the time of tissue harvest. Flow cytometry identified each population-epithelial (CD326(+)CD31(-)CD45(-)), endothelial (CD326(-)CD31(+)CD45(-)), and hematopoietic lineage (CD326(-)CD31(-)CD45(+))-and measured cellular viability by 7-aminoactinomycin D (7-AAD) staining. The Dispase method permitted discrimination of epithelial vs. endothelial cell death in a systemic lipopolysaccharide model of increased pulmonary vascular permeability. We conclude that application of a dissociative enzyme solution directly to the cellular compartments of interest at the time of tissue harvest maximized viable cellular yields of those compartments. Investigators could employ this dissociation method to simultaneously harvest epithelial, endothelial, and hematopoietic lineage and other lineage-negative cells for flow-cytometric analysis.

Indexed as

AnimalsCell LineageCell SurvivalEndothelial CellsEpithelial CellsFlow CytometryLungMaleMice, Inbred C57BLcell deathflow cytometrylungtissue digestiontissue processing

Identifiers

PMID26944088
PMCPMC4867353
OpenAlexW2292768254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.