Evidence map›Paper›PMID 26941234›Full record

ArticleVirus genes2016

Complete genome sequence of the cold-active bacteriophage VMY22 from Bacillus cereus.

Kunhao Qin, Benxu Cheng, Shengting Zhang, Nan Wang, Yuan Fang, Qi Zhang, Anxiu Kuang, Lianbing Lin, Xiuling Ji, Yunlin Wei

Abstract read
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In one paragraph

Article in Virus genes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Kunhao QinFaculty of Environmental Science and Engineering, Kunming University of Science and Technology, Kunming, 650500, China.
Benxu ChengRegional Academic Heath Center, School of Medicine, University of Texas Rio Grande Valley, Edinburg, TX, 78541, USA.
Shengting ZhangFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Nan WangFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Yuan FangFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Qi ZhangFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Anxiu KuangDepartment of Biology, University of Texas Rio Grande Valley, 1201 West University Drive, Edinburg, TX, 78539, USA.
Lianbing LinFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Xiuling JiFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China. jixiuling1023@gmail.com.
Yunlin WeiFaculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China. weiyunlin18@gmail.com.
Kunming University of Science and Technology · CNThe University of Texas Rio Grande Valley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cold-active bacteriophage VMY22, belonging to the Podoviridae family, was isolated from Mingyong Glacier in China. Sequence analysis revealed that the genome is 18,609 bp long, with an overall G + C content of 36.4 mol%, and 25 open reading frames (ORFs). The sequence contains 46 potential promoters, 6 transcription terminators, and no tRNAs. Most of the ORFs show a high degree of similarity to B103 (NC_004165). Two noteworthy findings were made. First, one of the predicted proteins, ORF 19, shows high sequence similarity to the bacteriocin biosynthesis protein from Bacillus cereus. From this information, we propose that the VMY22 phage is at an intermediate phase in its coevolution with its bacterial host. Second, seven of the hypothetical proteins appear to be unique to this cold-active B. cereus phage (i.e., not found in temperate-active B. cereus phages). These observations add to our current knowledge about the coevolution of bacteriophages and their hosts. The identification of a novel group of gene and protein structures and functions will lead to a better understanding of cold-adaptation mechanisms in bacteria and their bacteriophages.

Indexed as

Genome, ViralAnti-Bacterial AgentsBacillus cereusBacillus PhagesBacterial ProteinsBase CompositionChinaChromosome MappingDNA, ViralEvolution, MolecularOpen Reading FramesPhylogenyPromoter Regions, GeneticSequence Analysis, DNATranscription Termination, GeneticViral ProteinsAnti-Bacterial AgentsBacterial ProteinsDNA, ViralViral ProteinsBacteriocinBacteriophageCold-active phageSequence analysis

Identifiers

PMID26941234
OpenAlexW2288744561

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.