Evidence map›Paper›PMID 26941120›Full record

ArticleNature communications2016

Genetic suppression reveals DNA repair-independent antagonism between BRCA1 and COBRA1 in mammary gland development.

Sreejith J Nair, Xiaowen Zhang, Huai-Chin Chiang, Md Jamiul Jahid, Yao Wang, Paula Garza, Craig April, Neeraj Salathia, Tapahsama Banerjee, Fahad S Alenazi and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. R-loop functions inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Article
  7. The BRCA1 BRCT promotes antisense RNA production and double-stranded RNA formation to suppress ribosomal R-loops.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Cell-type-specific epigenomic variations associated withNAR genomics and bioinformatics · 2022
    Article
  9. Review
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  13. Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Sreejith J NairDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Xiaowen ZhangDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Huai-Chin ChiangDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Md Jamiul JahidDepartment of Computer Science, The University of Texas at San Antonio, San Antonio, Texas 78249, USA.
Yao WangDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Paula GarzaDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Craig AprilResearch and Development, Illumina, Inc., San Diego, California 92122, USA.
Neeraj SalathiaResearch and Development, Illumina, Inc., San Diego, California 92122, USA.
Tapahsama BanerjeeDepartment of Biomedical Informatics, The Ohio State University, Columbus, Ohio 43210, USA.
Fahad S AlenaziDepartment of Computer Science, The University of Texas at San Antonio, San Antonio, Texas 78249, USA.
Jianhua RuanDepartment of Computer Science, The University of Texas at San Antonio, San Antonio, Texas 78249, USA.
Jian-Bing FanResearch and Development, Illumina, Inc., San Diego, California 92122, USA.
Jeffrey D ParvinDepartment of Biomedical Informatics, The Ohio State University, Columbus, Ohio 43210, USA.
Victor X JinDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Yanfen HuDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Rong LiDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
The University of Texas Health Science Center at San Antonio · USIllumina (United States) · USThe University of Texas at San Antonio · USThe Ohio State University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR001120 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2013 to 2017
$16.5M
RCMI Center for Interdiscplinary Health Research CIHRG12MD007591 · NIMHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI PERRY, GEORGE · 2012 to 2016
$10.4M
Omics analysis of three-dimensional transcriptional regulationR01GM114142 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JIN, VICTOR, LIN, SHILI · 2015 to 2024
$2.7M
Informatics methods for identifying breast cancer control genes and proteinsR01CA141090 · NCI · OHIO STATE UNIVERSITY · PI CATALYUREK, UMIT V., HUANG, KUN · 2009 to 2013
$2.2M
Crosstalk between BRCA1 and Transcription in Breast CancerR01CA220578 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LI, RONG · 2017 to 2022
$2.1M
Regulation of hormone production by matrix proteinsR01CA161349 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LI, RONG · 2012 to 2016
$1.5M
THE FEASIBILITY STUDIES FOR COLLABORATIVE INTERACTION FOR MINORITY INSTITUTE/CANP20CA165589 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEACH, ROBIN JEAN · 2012 to 2015
$777k
(PQA-2) Reprogramming of circulating adipose stromal cells by mechanical stressR21CA184084 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HU, YANFEN, LI, RONG · 2014 to 2015
$354k
NCATS NIH HHS UL1 TR001120NCI NIH HHS CA141090NCI NIH HHS CA161349NCI NIH HHS CA170306NCI NIH HHS CA184084NCI NIH HHS P20 CA165589NCI NIH HHS P20CA165589NCI NIH HHS P30 CA016058NCI NIH HHS P30 CA054174NCI NIH HHS P30CA054174NCI NIH HHS R01 CA141090NCI NIH HHS R01 CA161349NCI NIH HHS R01 CA220578NCI NIH HHS R21 CA184084NIGMS NIH HHS R01 GM114142NIMHD NIH HHS G12 MD007591NIMHD NIH HHS G12MD007591
6 · The paper itself

Abstract

The breast cancer susceptibility gene BRCA1 is well known for its function in double-strand break (DSB) DNA repair. While BRCA1 is also implicated in transcriptional regulation, the physiological significance remains unclear. COBRA1 (also known as NELF-B) is a BRCA1-binding protein that regulates RNA polymerase II (RNAPII) pausing and transcription elongation. Here we interrogate functional interaction between BRCA1 and COBRA1 during mouse mammary gland development. Tissue-specific deletion of Cobra1 reduces mammary epithelial compartments and blocks ductal morphogenesis, alveologenesis and lactogenesis, demonstrating a pivotal role of COBRA1 in adult tissue development. Remarkably, these developmental deficiencies due to Cobra1 knockout are largely rescued by additional loss of full-length Brca1. Furthermore, Brca1/Cobra1 double knockout restores developmental transcription at puberty, alters luminal epithelial homoeostasis, yet remains deficient in homologous recombination-based DSB repair. Thus our genetic suppression analysis uncovers a previously unappreciated, DNA repair-independent function of BRCA1 in antagonizing COBRA1-dependent transcription programme during mammary gland development.

Indexed as

AgingAnimalsBRCA1 ProteinDNA Breaks, Double-StrandedDNA RepairEpithelial CellsEstrogensFemaleGene Expression Regulation, DevelopmentalHomeostasisMammary Glands, AnimalMiceMice, KnockoutNuclear ProteinsProgestinsRNA-Binding ProteinsBRCA1 ProteinBrca1 protein, mouseCobra1 protein, mouseEstrogensNuclear ProteinsProgestinsRNA-Binding ProteinsTumor Suppressor Proteins

Identifiers

PMID26941120
PMCPMC4785232
OpenAlexW2293001166

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.