Evidence map›Paper›PMID 26941114›Full record

ArticleEpidemiology and infection2016

Helicobacter pylori outer membrane protein and virulence marker differences in expatriate patients.

J Yakoob, Z Abbas, W Jafri, R Khan, S A Salim, S Awan, S Abid, S Hamid, Z Ahmad

Abstract read
In one paragraph

Article in Epidemiology and infection, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Virulence of Helicobacter pylori outer membrane proteins: an updated review.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

J YakoobDepartment of Medicine,Aga Khan University,Karachi,Pakistan.
Z AbbasDepartment of Medicine,Aga Khan University,Karachi,Pakistan.
W JafriDepartment of Medicine,Aga Khan University,Karachi,Pakistan.
R KhanDepartment of Medicine,Aga Khan University,Karachi,Pakistan.
S A SalimDepartment of Medicine,Aga Khan University,Karachi,Pakistan.
S AwanDepartment of Medicine,Aga Khan University,Karachi,Pakistan.
S AbidDepartment of Medicine,Aga Khan University,Karachi,Pakistan.
S HamidDepartment of Medicine,Aga Khan University,Karachi,Pakistan.
Z AhmadDepartment of Medicine Pathology,Aga Khan University,Karachi,Pakistan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We studied the prevalence of Helicobacter pylori virulence markers, e.g. cytotoxin associated gene (cagA), cagA promoter, vacuolating associated cytotoxin A (vacA) alleles induced by contact with epithelium (iceA type), and outer membrane protein Q (hopQ) in expatriates and compared them with those in local residents. Gastric biopsies were obtained at endoscopy for culture, histology and PCR for virulence marker and hopQ. Of 309 patients, 236 (76%) were males with a mean age of 45 years. A total of 102 patients were expatriates. hopQ type 1 was present in 98 (47%) local residents compared to 88 (86%) expatriates (P < 0·001), while hopQ type 2 was present in 176 (85%) local residents, compared to 60 (59%) expatriates (P < 0·001). H. pylori virulence marker cagA was positive in 97 (47%) local residents compared to 86 (84%) expatriates (P < 0·001) while cagA-P was positive in 72 (35%) local residents compared to 87 (85%) expatriates (P < 0·001). iceA type 1 was positive in 157 (76%) local residents compared to 45 (44%) expatriates (P < 0·001), while iceA type 2 was positive in 81 (39%) local residents compared to 86 (84%) expatriates (P < 0·001). Distribution of H. pylori cagA, cagA promoter, iceA and hopQ type in local residents and expatriates was different. H. pylori virulence markers were associated with severe pathology in expatriates.

Indexed as

AdolescentAdultAgedBacterial Outer Membrane ProteinsBiomarkersFemaleHelicobacter InfectionsHelicobacter pyloriHumansMaleMiddle AgedPakistanSequence Analysis, DNAVirulenceYoung AdultBacterial Outer Membrane ProteinsBiomarkerscagAcagA promotergastric carcinomagastric ulcergastritisHelicobacter pyloriiceAouter membrane protein Q

Identifiers

PMID26941114
PMCPMC9150591

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.