Evidence map›Paper›PMID 26940877›Full record

ArticleThe Journal of biological chemistry2016

Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues.

Matthew D Youngblut, Chi-Lin Tsai, Iain C Clark, Hans K Carlson, Adrian P Maglaqui, Phonchien S Gau-Pan, Steven A Redford, Alan Wong, John A Tainer, John D Coates

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Review
  2. Article
  3. Structure and function of periplasmic nitrate reductase.Biochemical Society transactions · 2026
    Review
  4. Donor-acceptor catalysis with defective MoSNature communications · 2026
    Article
  5. Article
  6. Article
  7. Genetic identification of the selenate reductase inApplied and environmental microbiology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The critical role of a conserved lysine residue in periplasmic nitrate reductase catalyzed reactions.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Making Moco: A Personal History.Molecules (Basel, Switzerland) · 2023
    Review
  19. Article
  20. Characterisation of the redox centers of ethylbenzene dehydrogenase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Matthew D YoungblutFrom the Energy Biosciences Institute and.
Chi-Lin TsaiMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and.
Iain C ClarkFrom the Energy Biosciences Institute and.
Hans K CarlsonFrom the Energy Biosciences Institute and.
Adrian P MaglaquiFrom the Energy Biosciences Institute and.
Phonchien S Gau-PanFrom the Energy Biosciences Institute and.
Steven A RedfordFrom the Energy Biosciences Institute and.
Alan WongFrom the Energy Biosciences Institute and.
John A TainerMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Molecular and Cellular Oncology, The University of Texas M. D. Anderson Cancer Center, Houston, Texas 77030.
John D CoatesFrom the Energy Biosciences Institute and Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, jdcoates@berkeley.edu.

Funding

MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
NIGMS NIH HHS R01 GM105404
6 · The paper itself

Abstract

Perchlorate is an important ion on both Earth and Mars. Perchlorate reductase (PcrAB), a specialized member of the dimethylsulfoxide reductase superfamily, catalyzes the first step of microbial perchlorate respiration, but little is known about the biochemistry, specificity, structure, and mechanism of PcrAB. Here we characterize the biophysics and phylogeny of this enzyme and report the 1.86-Å resolution PcrAB complex crystal structure. Biochemical analysis revealed a relatively high perchlorate affinity (Km = 6 μm) and a characteristic substrate inhibition compared with the highly similar respiratory nitrate reductase NarGHI, which has a relatively much lower affinity for perchlorate (Km = 1.1 mm) and no substrate inhibition. Structural analysis of oxidized and reduced PcrAB with and without the substrate analog SeO3 (2-) bound to the active site identified key residues in the positively charged and funnel-shaped substrate access tunnel that gated substrate entrance and product release while trapping transiently produced chlorate. The structures suggest gating was associated with shifts of a Phe residue between open and closed conformations plus an Asp residue carboxylate shift between monodentate and bidentate coordination to the active site molybdenum atom. Taken together, structural and mutational analyses of gate residues suggest key roles of these gate residues for substrate entrance and product release. Our combined results provide the first detailed structural insight into the mechanism of biological perchlorate reduction, a critical component of the chlorine redox cycle on Earth.

Indexed as

Bacterial ProteinsCatalytic DomainDNA HelicasesOxidoreductasesPerchloratesRhodocyclaceaeBacterial ProteinsDNA HelicasesOxidoreductasespcrA protein, BacteriaperchloratePerchloratesDMSO reductase superfamilyenzyme mechanismiron-sulfur proteinMo-bis-MGDmolybdenumperchlorate reductasestructure-functionsubstrate access tunnelsubstrate inhibitionx-ray crystallography

Identifiers

PMID26940877
PMCPMC4861485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.