Evidence map›Paper›PMID 26940656›Full record

ArticleJournal of applied physiology (Bethesda, Md. : 1985)2016

A skeleton-tree-based approach to acinar morphometric analysis using microcomputed tomography with comparison of acini in young and old C57BL/6 mice.

Abhilash S Kizhakke Puliyakote, Dragoş M Vasilescu, Kriti Sen Sharma, Ge Wang, Eric A Hoffman

Abstract read
In one paragraph

Article in Journal of applied physiology (Bethesda, Md. : 1985), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Aging-related changes in respiratory system mechanics and morphometry in mice.American journal of physiology. Lung cellular and molecular physiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Abhilash S Kizhakke PuliyakoteDepartment of Radiology, University of Iowa, Iowa City, Iowa; Department of Biomedical Engineering, University of Iowa, Iowa City, Iowa;
Dragoş M VasilescuDepartment of Radiology, University of Iowa, Iowa City, Iowa;
Kriti Sen SharmaDepartment of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia; and.
Ge WangDepartment of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia; and Department of Biomedical Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia.
Eric A HoffmanDepartment of Radiology, University of Iowa, Iowa City, Iowa; Department of Biomedical Engineering, University of Iowa, Iowa City, Iowa; Department of Medicine, University of Iowa, Iowa City, Iowa; eric-hoffman@uiowa.edu.

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Brandi Janssen · 1990 to 2026
$40.5M
Multi-center Structural & Functional Quantitative CT Pulmonary PhenotypingR01HL112986 · NHLBI · UNIVERSITY OF IOWA · PI HOFFMAN, ERIC ALFRED · 2012 to 2016
$4.6M
Quantitative CT-Base Lung Atlas of the MouseR01HL080285 · NHLBI · UNIVERSITY OF IOWA · PI HOFFMAN, ERIC ALFRED · 2006 to 2010
$2.3M
Nodestruction Multi-Scale Micro-CT Imaging SystemS10OD018503 · OD · UNIVERSITY OF IOWA · PI SIEREN, JESSICA C · 2015 to 2015
$1.1M
NHLBI NIH HHS R01 HL080285NHLBI NIH HHS R01 HL112986NIEHS NIH HHS P30 ES005605NIH HHS S10 OD018503
6 · The paper itself

Abstract

We seek to establish a method using interior tomographic techniques (Xradia MicroXCT-400) for acinar morphometric analysis using the pathway center lines from micro X-ray computed tomographic (Micro-CT) images as the road map. Through the application of these techniques, we present a method to extend the atlas of murine lungs to acinar levels and present a comparison between two age groups of the C57BL/6 strain. Lungs fixed via vascular perfusion were scanned using high-resolution Micro-CT protocols. Individual acini were segmented, and skeletonized paths to alveolar sacs from the entrance to the acinus were formed. Morphometric parameters, including branch lengths, diameters, and branching angles, were generated. Six mice each, at two age groups (∼20 and ∼90 wk of age), were studied. Additive Gaussian noise (0 mean and SD 1, 2, 5, and 10) was used to test the robustness of the analytical method. Noise-based variations were within ±6 μm for branch lengths and ±5 μm for diameters. At a noise level of 10, errors increased. Branch diameters were less susceptible to noise than lengths. There was >95% center line overlap across all noise levels. The measurements obtained using the center lines as a road map were not affected by added noise. Acini from younger mice had smaller branch diameters and lengths at all generations without significant differences in branching angles. The relative distribution of volume in the alveolar ducts was similar across both age groups. The method has been demonstrated to be repeatable and robust to image noise and provides a new, nondestructive technique to assess and compare acinar morphometry quantitatively.

Indexed as

Acinar CellsAnimalsImage Processing, Computer-AssistedLungMiceMice, Inbred C57BLMusculoskeletal SystemNoisePulmonary AlveoliX-Ray Microtomographyacinar morphometryacinushigh-resolution imagingMicro-CTquantitative CT

Identifiers

PMID26940656
PMCPMC4909836

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.