Evidence map›Paper›PMID 26940229›Full record

ArticleRNA biology2016

A multistress responsive type I toxin-antitoxin system: bsrE/SR5 from the B. subtilis chromosome.

Peter Müller, Natalie Jahn, Christiane Ring, Caroline Maiwald, Robert Neubert, Christin Meißner, Sabine Brantl

Abstract read
In one paragraph

Article in RNA biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Regulatory RNAs inSynthetic and systems biotechnology · 2024
    Review
  5. Investigation of sRNA-mRNA Interactions in Bacillus subtilis In Vivo.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Small proteins in Gram-positive bacteria.FEMS microbiology reviews · 2023
    Article
  7. Design of artificial small regulatorySynthetic and systems biotechnology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Microorganisms · 2021
    Review
  13. Moonlighting inMicroorganisms · 2021
    Review
  14. BSGatlas: a unifiedMicrobial genomics · 2021
    Article
  15. Article
  16. RNA Regulated Toxin-Antitoxin Systems in Pathogenic Bacteria.Frontiers in cellular and infection microbiology · 2021
    Review
  17. A peptide of a type I toxin-antitoxin system inducesProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Intermolecular Communication inFrontiers in molecular biosciences · 2020
    Review
  19. Management of Osmoprotectant Uptake Hierarchy inFrontiers in microbiology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Peter Müllera Friedrich-Schiller-Universität Jena , Lehrstuhl für Genetik , AG Bakteriengenetik, Philosophenweg, Jena , Germany.
Natalie Jahna Friedrich-Schiller-Universität Jena , Lehrstuhl für Genetik , AG Bakteriengenetik, Philosophenweg, Jena , Germany.
Christiane Ringa Friedrich-Schiller-Universität Jena , Lehrstuhl für Genetik , AG Bakteriengenetik, Philosophenweg, Jena , Germany.
Caroline Maiwalda Friedrich-Schiller-Universität Jena , Lehrstuhl für Genetik , AG Bakteriengenetik, Philosophenweg, Jena , Germany.
Robert Neuberta Friedrich-Schiller-Universität Jena , Lehrstuhl für Genetik , AG Bakteriengenetik, Philosophenweg, Jena , Germany.
Christin Meißnera Friedrich-Schiller-Universität Jena , Lehrstuhl für Genetik , AG Bakteriengenetik, Philosophenweg, Jena , Germany.
Sabine Brantla Friedrich-Schiller-Universität Jena , Lehrstuhl für Genetik , AG Bakteriengenetik, Philosophenweg, Jena , Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

bsrE/SR5 is a type I TA system from prophage-like element P6 of the B. subtilis chromosome. The 256 nt bsrE RNA encodes a 30 aa toxin. The antitoxin SR5 is a 163 nt antisense RNA. Both genes overlap at their 3' ends. Overexpression of bsrE causes cell lysis on agar plates, which can be neutralized by sr5 overexpression, whereas deletion of the chromosomal sr5 copy has no effect. SR5 is short-lived with a half-life of ≈7 min, whereas bsrE RNA is stable with a half-life of >80 min. The sr5 promoter is 10-fold stronger than the bsrE promoter. SR5 interacts with the 3' UTR of bsrE RNA, thereby promoting its degradation by recruiting RNase III. RNase J1 is the main RNase responsible for SR5 and bsrE RNA degradation, and PnpA processes an SR5 precursor to the mature RNA. Hfq stabilizes SR5, but is not required for its inhibitory function. While bsrE RNA is affected by temperature shock and alkaline stress, the amount of SR5 is significantly influenced by various stresses, among them pH, anoxia and iron limitation. Only the latter one is dependent on sigB. Both RNAs are extremely unstable upon ethanol stress due to rapid degradation by RNase Y.

Indexed as

Bacillus subtilisBacterial ToxinsChromosomes, BacterialGene Expression Regulation, BacterialHalf-LifePromoter Regions, GeneticRNA, BacterialRNA, Small UntranslatedRNA StabilityBacterial ToxinsRNA, BacterialRNA, Small UntranslatedBacillus subtilisbsrE/SR5RNase III cleavageRNase Ysmall regulatory RNAsRNAstress responsetype I toxin-antitoxin system

Identifiers

PMID26940229
PMCPMC4962801

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.