Evidence map›Paper›PMID 26940089›Full record

ArticleJournal of the American Society of Nephrology : JASN2016

Fine Mapping Implicates a Deletion of CFHR1 and CFHR3 in Protection from IgA Nephropathy in Han Chinese.

Jingyuan Xie, Krzysztof Kiryluk, Yifu Li, Nikol Mladkova, Li Zhu, Ping Hou, Hong Ren, Weiming Wang, Hong Zhang, Nan Chen and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 87 citations in OpenAlex.

  1. A Rare Genetic Defect ofFrontiers in immunology · 2019
    Trial
  2. Review
  3. Association of Complement Genetics with Outcomes in IgA Nephropathy.Clinical journal of the American Society of Nephrology : CJASN · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. An Update on the Genetics of IgA Nephropathy.Journal of clinical medicine · 2023
    Review
  19. The role of complement in kidney disease.Nature reviews. Nephrology · 2023
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Jingyuan XieInstitute of Nephrology, Department of Nephrology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China; Department of Medicine, Division of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York; and.
Krzysztof KirylukDepartment of Medicine, Division of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York; and.
Yifu LiDepartment of Medicine, Division of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York; and.
Nikol MladkovaDepartment of Medicine, Division of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York; and.
Li ZhuRenal Division, Peking University First Hospital, Peking University Institute of Nephrology, Beijing, China.
Ping HouRenal Division, Peking University First Hospital, Peking University Institute of Nephrology, Beijing, China.
Hong RenInstitute of Nephrology, Department of Nephrology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Weiming WangInstitute of Nephrology, Department of Nephrology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Hong ZhangRenal Division, Peking University First Hospital, Peking University Institute of Nephrology, Beijing, China.
Nan ChenInstitute of Nephrology, Department of Nephrology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Ali G GharaviDepartment of Medicine, Division of Nephrology, College of Physicians and Surgeons, Columbia University, New York, New York; and ag2239@columbia.edu.
Columbia University · USRuijin Hospital · CNPeking University First Hospital · CNPeking University · CN

Funding

OMOP information model for eMERGE phenotypingU01HG008680 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wendy K Chung, GEORGE M HRIPCSAK · 2015 to 2026
$13.3M
Elucidating IgA Nephropathy through Genetic Studies of IgA1 GlycosylationR01DK082753 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GHARAVI, ALI G, NOVAK, JAN · 2009 to 2024
$8.7M
Genetics of IgA nephropathy by integrative network-based association studiesR01DK105124 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Krzysztof Kiryluk · 2015 to 2026
$4.8M
Discovery and fine mapping of susceptibility loci for IgA nephropathyR01DK095510 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GHARAVI, ALI G, LIFTON, RICHARD P · 2012 to 2016
$2.7M
Ancestry, Genetic Risk and Health Disparities in Immune-Mediated NephritisR01MD009223 · NIMHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BOMBACK, ANDREW STEPHEN, GHARAVI, ALI G · 2014 to 2018
$2.2M
Quantitative Genetics of Defective IgA1 Glycosylation in IgA NephropathyK23DK090207 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KIRYLUK, KRZYSZTOF · 2011 to 2014
$729k
Population-based study of serum IgA, IgA1, and galactose-deficient IgA1 levelsR03DK099564 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KIRYLUK, KRZYSZTOF · 2013 to 2014
$160k
NHGRI NIH HHS U01 HG008680NIDDK NIH HHS K23 DK090207NIDDK NIH HHS R01 DK082753NIDDK NIH HHS R01 DK095510NIDDK NIH HHS R01 DK105124NIDDK NIH HHS R03 DK099564NIMHD NIH HHS R01 MD009223
6 · The paper itself

Abstract

An intronic variant at the complement factor H (CFH) gene on chromosome 1q32 (rs6677604) associates with risk of IgA nephropathy (IgAN), but the association signal has not been uniformly replicated in Han Chinese populations. We investigated whether the causal sequence variant resides in the CFH gene or the neighboring complement factor H-related 1 (CFHR1) gene and CFHR3, which harbor an 84-kb combined deletion (CFHR3,1Δ) in linkage disequilibrium with rs6677604. Imputation of 1000 Genomes Project data did not suggest new causal single-nucleotide variants within the CFH cluster. We next performed copy number analysis across the CFH locus in two independent Han Chinese case-control cohorts (combined n=3581). The CFHR3,1Δ and rs6677604-A alleles were rare (4.4% in patients and 7.1% in controls) and in strong linkage disequilibrium with each other (r

Indexed as

Gene DeletionAdolescentAdultAgedAged, 80 and overAsian PeopleBlood ProteinsChildChromosome MappingComplement C3b Inactivator ProteinsFemaleGenotypeGlomerulonephritis, IGAHumansMaleMiddle AgedBlood ProteinsCFHR1 protein, humanCFHR3 protein, humanComplement C3b Inactivator Proteinscomplementgenetic renal diseasehuman geneticsIgA nephropathy

Identifiers

PMID26940089
PMCPMC5042673
OpenAlexW2330239735

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.