Evidence map›Paper›PMID 26939124›Full record

ArticlePLoS pathogens2016

PKR Transduces MDA5-Dependent Signals for Type I IFN Induction.

Alissa M Pham, Felicia Gilfoy Santa Maria, Tanaya Lahiri, Eugene Friedman, Isabelle J Marié, David E Levy

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 110 citations in OpenAlex.

  1. Trial
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  9. Functional Analysis of Oligoadenylate Synthetase in the Emu (Animals : an open access journal from MDPI · 2024
    Article
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  14. DYT-Biomolecules · 2022
    Article
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Alissa M PhamDepartments of Pathology and Microbiology and NYU Cancer Institute, NYU School of Medicine, New York, New York, United States of America.
Felicia Gilfoy Santa MariaDepartments of Pathology and Microbiology and NYU Cancer Institute, NYU School of Medicine, New York, New York, United States of America.
Tanaya LahiriDepartments of Pathology and Microbiology and NYU Cancer Institute, NYU School of Medicine, New York, New York, United States of America.
Eugene FriedmanDepartments of Pathology and Microbiology and NYU Cancer Institute, NYU School of Medicine, New York, New York, United States of America.
Isabelle J MariéDepartments of Pathology and Microbiology and NYU Cancer Institute, NYU School of Medicine, New York, New York, United States of America.
David E LevyDepartments of Pathology and Microbiology and NYU Cancer Institute, NYU School of Medicine, New York, New York, United States of America.
New York University · US

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LIPKIN, W. IAN · 2003 to 2014
$100.8M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
NCI NIH HHS P30 CA016087NCI NIH HHS P30CA016087NIAID NIH HHS 5U54AI057158NIAID NIH HHS U54 AI057158
6 · The paper itself

Abstract

Sensing invading pathogens early in infection is critical for establishing host defense. Two cytosolic RIG-like RNA helicases, RIG-I and MDA5, are key to type I interferon (IFN) induction in response to viral infection. Mounting evidence suggests that another viral RNA sensor, protein kinase R (PKR), may also be critical for IFN induction during infection, although its exact contribution and mechanism of action are not completely understood. Using PKR-deficient cells, we found that PKR was required for type I IFN induction in response to infection by vaccinia virus lacking the PKR antagonist E3L (VVΔE3L), but not by Sendai virus or influenza A virus lacking the IFN-antagonist NS1 (FluΔNS1). IFN induction required the catalytic activity of PKR, but not the phosphorylation of its principal substrate, eIF2α, or the resulting inhibition of host translation. In the absence of PKR, IRF3 nuclear translocation was impaired in response to MDA5 activators, VVΔE3L and encephalomyocarditis virus, but not during infection with a RIG-I-activating virus. Interestingly, PKR interacted with both RIG-I and MDA5; however, PKR was only required for MDA5-mediated, but not RIG-I-mediated, IFN production. Using an artificially activated form of PKR, we showed that PKR activity alone was sufficient for IFN induction. This effect required MAVS and correlated with IRF3 activation, but no longer required MDA5. Nonetheless, PKR activation during viral infection was enhanced by MDA5, as virus-stimulated catalytic activity was impaired in MDA5-null cells. Taken together, our data describe a critical and non-redundant role for PKR following MDA5, but not RIG-I, activation to mediate MAVS-dependent induction of type I IFN through a kinase-dependent mechanism.

Indexed as

Cell LineDEAD Box Protein 58DEAD-box RNA HelicaseseIF-2 KinaseEncephalomyocarditis virusEukaryotic Initiation Factor-2Genes, ReporterHumansInterferon-Induced Helicase, IFIH1Interferon Type IMutationPhosphorylationReceptors, ImmunologicRNA, ViralSignal TransductionVacciniaDEAD Box Protein 58DEAD-box RNA HelicaseseIF-2 KinaseEukaryotic Initiation Factor-2IFIH1 protein, humanInterferon-Induced Helicase, IFIH1Interferon Type IReceptors, ImmunologicRIGI protein, humanRNA, ViralViral Proteins

Identifiers

PMID26939124
PMCPMC4777437
OpenAlexW2289154867

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.