Evidence map›Paper›PMID 26938654›Full record

ArticlePloS one2016

A Protocol for the Comprehensive Flow Cytometric Analysis of Immune Cells in Normal and Inflamed Murine Non-Lymphoid Tissues.

Yen-Rei A Yu, Emily G O'Koren, Danielle F Hotten, Matthew J Kan, David Kopin, Erik R Nelson, Loretta Que, Michael D Gunn

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 254 papers.

0numbers the graph read from it
0cells of the map it votes in
254citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

254 citing papers in PubMed, 379 citations in OpenAlex.

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  15. Aryl hydrocarbon receptor activation alters emergency hematopoiesis during influenza A virus infection.Toxicological sciences : an official journal of the Society of Toxicology · 2026
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  17. Cardiomyocyte β-arrestins mediate inflammation and cGAS-STING activation in CVB3 viral myocarditis.American journal of physiology. Heart and circulatory physiology · 2026
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  20. Review

194 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Yen-Rei A YuDepartment of Medicine, Division of Pulmonary and Critical Care Medicine, Duke University Medical Center, Durham, North Carolina, United States of America.
Emily G O'KorenDepartment of Immunology, Duke University Medical Center, Durham, North Carolina, United States of America.
Danielle F HottenDepartment of Medicine, Division of Cardiology, Duke University Medical Center, Durham, North Carolina, United States of America.
Matthew J KanDepartment of Immunology, Duke University Medical Center, Durham, North Carolina, United States of America.
David KopinSchool of Medicine, Duke University Medical Center, Durham, North Carolina, United States of America.
Erik R NelsonDepartment of Molecular & Integrative Physiology, University of Illinois, Champaign, Illinois, United States of America.
Loretta QueDepartment of Medicine, Division of Pulmonary and Critical Care Medicine, Duke University Medical Center, Durham, North Carolina, United States of America.
Michael D GunnDepartment of Medicine, Division of Cardiology, Duke University Medical Center, Durham, North Carolina, United States of America.
Duke Medical Center · USDuke University Hospital · USUniversity of Illinois Urbana-Champaign · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
Basic Immunology Training ProgramT32AI052077 · NIAID · DUKE UNIVERSITY · PI KRANGEL, MICHAEL S · 2002 to 2024
$4.2M
Role of Resident Monocytes in the Pathogenesis of Pulmonary Arterial HypertensionK08HL121185 · NHLBI · DUKE UNIVERSITY · PI YU, YEN-REI ANDREA · 2015 to 2019
$659k
NHLBI NIH HHS K08 HL121185NIAID NIH HHS T32 AI052077NIGMS NIH HHS T32 GM007171
6 · The paper itself

Abstract

Flow cytometry is used extensively to examine immune cells in non-lymphoid tissues. However, a method of flow cytometric analysis that is both comprehensive and widely applicable has not been described. We developed a protocol for the flow cytometric analysis of non-lymphoid tissues, including methods of tissue preparation, a 10-fluorochrome panel for cell staining, and a standardized gating strategy, that allows the simultaneous identification and quantification of all major immune cell types in a variety of normal and inflamed non-lymphoid tissues. We demonstrate that our basic protocol minimizes cell loss, reliably distinguishes macrophages from dendritic cells (DC), and identifies all major granulocytic and mononuclear phagocytic cell types. This protocol is able to accurately quantify 11 distinct immune cell types, including T cells, B cells, NK cells, neutrophils, eosinophils, inflammatory monocytes, resident monocytes, alveolar macrophages, resident/interstitial macrophages, CD11b- DC, and CD11b+ DC, in normal lung, heart, liver, kidney, intestine, skin, eyes, and mammary gland. We also characterized the expression patterns of several commonly used myeloid and macrophage markers. This basic protocol can be expanded to identify additional cell types such as mast cells, basophils, and plasmacytoid DC, or perform detailed phenotyping of specific cell types. In examining models of primary and metastatic mammary tumors, this protocol allowed the identification of several distinct tumor associated macrophage phenotypes, the appearance of which was highly specific to individual tumor cell lines. This protocol provides a valuable tool to examine immune cell repertoires and follow immune responses in a wide variety of tissues and experimental conditions.

Indexed as

AnimalsBasophilsB-LymphocytesCell SeparationDendritic CellsEosinophilsFlow CytometryInflammationKiller Cells, NaturalMacrophagesMast CellsMiceNeutrophilsT-Lymphocytes

Identifiers

PMID26938654
PMCPMC4777539
OpenAlexW2290890702

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.