Evidence map›Paper›PMID 26938115›Full record

ArticleNature protocols2016

Assembly and operation of the autopatcher for automated intracellular neural recording in vivo.

Suhasa B Kodandaramaiah, Gregory L Holst, Ian R Wickersham, Annabelle C Singer, Giovanni Talei Franzesi, Michael L McKinnon, Craig R Forest, Edward S Boyden

Open access · greenAbstract read
In one paragraph

Article in Nature protocols, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 71 citations in OpenAlex.

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  5. Synthetic biology in plants.Plant biotechnology (Tokyo, Japan) · 2024
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  14. [Communication sound recognition and response modification in the secondary auditory cortex of female mice].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2021
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  15. Rapid Cortical Adaptation and the Role of Thalamic Synchrony during Wakefulness.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  16. Review
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  19. TbScience advances · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Suhasa B KodandaramaiahMedia Lab, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Gregory L HolstGeorge W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
Ian R WickershamMedia Lab, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Annabelle C SingerMedia Lab, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Giovanni Talei FranzesiMedia Lab, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Michael L McKinnonDepartment of Physiology, School of Medicine, Emory University, Atlanta, Georgia, USA.
Craig R ForestGeorge W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
Edward S BoydenMedia Lab, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Georgia Institute of Technology · USInstitute of Cognitive and Brain Sciences · USMassachusetts Institute of Technology · USEmory University · USMcGovern Institute for Brain Research · US

Funding

Recording neural activities onto DNAR01MH103910 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI BOYDEN, EDWARD S., CHURCH, GEORGE M · 2013 to 2017
$9.5M
High-throughput robotic analysis of integrated neuronal phenotypesR01EY023173 · NEI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S., FOREST, CRAIG · 2012 to 2016
$4.3M
Millisecond-Timescale Whole-Brain Neural Activity Mapping in Health and DiseaseDP1NS087724 · NINDS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2013 to 2017
$3.9M
In-vivo circuit activity measurement at single cell, sub-threshold resolutionU01MH106027 · NIMH · GEORGIA INSTITUTE OF TECHNOLOGY · PI FOREST, CRAIG, STANLEY, GARRETT B. · 2014 to 2016
$1.5M
Vascular Interfaces for Brain Imaging and StimulationR24MH106075 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DESIMONE, ROBERT · 2014 to 2016
$1.4M
From Cells to Systems and Applications: Computational Neuroscience Training at EmT90DA032466 · NIDA · EMORY UNIVERSITY · PI JAEGER, DIETER, STANLEY, GARRETT B. · 2011 to 2015
$817k
NEI NIH HHS 1 R01 EY023173NEI NIH HHS 1R01EY023173NEI NIH HHS R01 EY023173NIDA NIH HHS 5T90DA032466NIDA NIH HHS T90 DA032466NIMH NIH HHS 1R01MH103910NIMH NIH HHS 1R24MH106075NIMH NIH HHS 1-U01-MH106027-01NIMH NIH HHS R01 MH103910NIMH NIH HHS R24 MH106075NIMH NIH HHS U01 MH106027NINDS NIH HHS DP1 NS087724
6 · The paper itself

Abstract

Whole-cell patch clamping in vivo is an important neuroscience technique that uniquely provides access to both suprathreshold spiking and subthreshold synaptic events of single neurons in the brain. This article describes how to set up and use the autopatcher, which is a robot for automatically obtaining high-yield and high-quality whole-cell patch clamp recordings in vivo. By following this protocol, a functional experimental rig for automated whole-cell patch clamping can be set up in 1 week. High-quality surgical preparation of mice takes ∼1 h, and each autopatching experiment can be carried out over periods lasting several hours. Autopatching should enable in vivo intracellular investigations to be accessible by a substantial number of neuroscience laboratories, and it enables labs that are already doing in vivo patch clamping to scale up their efforts by reducing training time for new lab members and increasing experimental durations by handling mentally intensive tasks automatically.

Indexed as

AnimalsAutomation, LaboratoryMicePatch-Clamp TechniquesTime Factors

Identifiers

PMID26938115
PMCPMC4877510
OpenAlexW2292796143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.