Evidence map›Paper›PMID 26937551›Full record

ArticleBiochemistry2016

Conformational Flexibility Enables the Function of a BECN1 Region Essential for Starvation-Mediated Autophagy.

Yang Mei, Arvind Ramanathan, Karen Glover, Christopher Stanley, Ruslan Sanishvili, Srinivas Chakravarthy, Zhongyu Yang, Christopher L Colbert, Sangita C Sinha

Abstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Tumor biomarkers for diagnosis, prognosis and targeted therapy.Signal transduction and targeted therapy · 2024
    Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Beclin 1 Phosphorylation - at the Center of Autophagy Regulation.Frontiers in cell and developmental biology · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. BECN2 interacts with ATG14 through a metastable coiled-coil to mediate autophagy.Protein science : a publication of the Protein Society · 2017
    Article
  16. Article
  17. Article
  18. Conformational flexibility of BECN1: Essential to its key role in autophagy and beyond.Protein science : a publication of the Protein Society · 2016
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yang MeiDepartment of Chemistry and Biochemistry, North Dakota State University , Fargo, North Dakota 58108-6050, United States.
Arvind RamanathanHealth Data Sciences Institute, Computational Science and Engineering Division, Oak Ridge National Laboratory , Oak Ridge, Tennessee 37830, United States.
Karen GloverDepartment of Chemistry and Biochemistry, North Dakota State University , Fargo, North Dakota 58108-6050, United States.
Christopher StanleyBiology and Soft Matter Division, Oak Ridge National Laboratory , Oak Ridge, Tennessee 37831, United States.
Ruslan SanishviliGMCA@APS, X-ray Science Division, Advanced Photon Source, Argonne National Laboratory , Argonne, Illinois 60439, United States.
Srinivas ChakravarthyBio-CAT, Advanced Photon Source , 9700 South Cass Avenue, Building 435B, Argonne, Illinois 60439, United States.
Zhongyu YangDepartment of Chemistry and Biochemistry, North Dakota State University , Fargo, North Dakota 58108-6050, United States.
Christopher L ColbertDepartment of Chemistry and Biochemistry, North Dakota State University , Fargo, North Dakota 58108-6050, United States.
Sangita C SinhaDepartment of Chemistry and Biochemistry, North Dakota State University , Fargo, North Dakota 58108-6050, United States.

Funding

Time resolved SAXS studies on the RP2/Arl3 complex pp.484-485P41GM103622 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2012 to 2020
$11.9M
Pilot Projects: Core DP30GM103332 · NIGMS · NORTH DAKOTA STATE UNIVERSITY · PI SIBI, MUKUND P. · 2012 to 2016
$4.9M
Advanced Pixel Array Detector for Time-Resolved SAXS and Fiber DiffractionS10OD018090 · OD · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2014 to 2014
$529k
Mechanism of inner membrane sigma-regulator function in Gram-negative bacteriaR15GM113227 · NIGMS · NORTH DAKOTA STATE UNIVERSITY · PI COLBERT, CHRISTOPHER L · 2015 to 2016
$408k
Intrinsically Disordered Regions in Autophagy ProteinsR03NS090939 · NINDS · NORTH DAKOTA STATE UNIVERSITY · PI SINHA, SANGITA · 2014 to 2015
$145k
NIGMS NIH HHS P30 GM103332NIGMS NIH HHS P41 GM103622NIGMS NIH HHS R15 GM113227NIH HHS S10 OD018090NINDS NIH HHS R03 NS090939
6 · The paper itself

Abstract

BECN1 is essential for autophagy, a critical eukaryotic cellular homeostasis pathway. Here we delineate a highly conserved BECN1 domain located between previously characterized BH3 and coiled-coil domains and elucidate its structure and role in autophagy. The 2.0 Å sulfur-single-wavelength anomalous dispersion X-ray crystal structure of this domain demonstrates that its N-terminal half is unstructured while its C-terminal half is helical; hence, we name it the flexible helical domain (FHD). Circular dichroism spectroscopy, double electron-electron resonance-electron paramagnetic resonance, and small-angle X-ray scattering (SAXS) analyses confirm that the FHD is partially disordered, even in the context of adjacent BECN1 domains. Molecular dynamic simulations fitted to SAXS data indicate that the FHD transiently samples more helical conformations. FHD helicity increases in 2,2,2-trifluoroethanol, suggesting it may become more helical upon binding. Lastly, cellular studies show that conserved FHD residues are required for starvation-induced autophagy. Thus, the FHD likely undergoes a binding-associated disorder-to-helix transition, and conserved residues critical for this interaction are essential for starvation-induced autophagy.

Indexed as

AutophagyModels, MolecularAmino Acid SequenceApoptosis Regulatory ProteinsBeclin-1BiomarkersCell Line, TumorConserved SequenceCulture Media, Serum-FreeHumansMembrane ProteinsMolecular Docking SimulationMolecular Dynamics SimulationPeptide FragmentsPliabilityPoint MutationApoptosis Regulatory ProteinsBeclin-1BECN1 protein, humanBiomarkersCulture Media, Serum-FreeMembrane ProteinsPeptide FragmentsRecombinant Proteins

Identifiers

PMID26937551
PMCPMC4876825

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.