Evidence map›Paper›PMID 26935894›Full record

SynthesisNeurology2016

Low-frequency and common genetic variation in ischemic stroke: The METASTROKE collaboration.

Rainer Malik, Matthew Traylor, Sara L Pulit, Steve Bevan, Jemma C Hopewell, Elizabeth G Holliday, Wei Zhao, Patricia Abrantes, Philippe Amouyel, John R Attia and 43 more

Erratum issuedAbstract readMeta-Analysis
In one paragraph

Synthesis in Neurology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 91 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed, 11 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 11 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Pooled it
  8. Pooled it
  9. Neurology · 2017
    Pooled it
  10. Pooled it
  11. The SG13S114 polymorphism of the ALOX5AP gene is associated with ischemic stroke in Europeans: a meta-analysis of 8062 subjects.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2017
    Pooled it
  12. Trial
  13. Trial
  14. GlialeLife · 2026
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

53 authors.

Rainer Malik
Matthew Traylor
Sara L Pulit
Steve Bevan
Jemma C Hopewell
Elizabeth G Holliday
Wei Zhao
Patricia Abrantes
Philippe Amouyel
John R Attia
Thomas W K Battey
Klaus Berger
Giorgio B Boncoraglio
Ganesh Chauhan
Yu-Ching Cheng
Wei-Min Chen
Robert Clarke
Ioana Cotlarciuc
Stephanie Debette
Guido J Falcone
Jose M Ferro
Dale M Gamble
Andreea Ilinca
Steven J Kittner
Christina E Kourkoulis
Robin Lemmens
Christopher R Levi
Peter Lichtner
Arne Lindgren
Jingmin Liu
James F Meschia
Braxton D Mitchell
Sofia A Oliveira
Joana Pera
Alex P Reiner
Peter M Rothwell
Pankaj Sharma
Agnieszka Slowik
Cathie L M Sudlow
Turgut Tatlisumak
Vincent Thijs
Astrid M Vicente
Daniel Woo
Sudha Seshadri
Danish Saleheen
Jonathan Rosand
Hugh S Markus
Bradford B Worrall
Martin Dichgans
ISGC Analysis Group
METASTROKE collaboration
Wellcome Trust Case Control Consortium 2 (WTCCC2)
NINDS Stroke Genetics Network (SiGN)

Funding

UC Davis Alzheimer's Disease Core CenterP30AG010129 · NIA · UNIVERSITY OF CALIFORNIA DAVIS · PI DECARLI, CHARLES · 1991 to 2020
$28.3M
PRECURSORS OF STROKE INCIDENCE AND PROGNOSISR01NS017950 · NINDS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Hugo Javier Aparicio, Jose Rafael Romero · 1985 to 2026
$22.9M
Temporal Trends, Novel Imaging and Molecular Characterization of Preclinical and Clinical Alzheimer's Disease in the Framingham CohortsR01AG054076 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI DECARLI, CHARLES, SESHADRI, SUDHA · 2016 to 2020
$12.3M
Collaborative GWAS of Dementia, AD and related MRI and Cognitive EndophenotypesR01AG033193 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SESHADRI, SUDHA · 2009 to 2016
$4.4M
CHARGE: Identifying Risk & Protective SNV for AD in ADSP Case-control SampleU01AG049505 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SESHADRI, SUDHA · 2014 to 2017
$3.0M
British Heart Foundation FS/14/55/30806NIA NIH HHS P30 AG010129NIA NIH HHS R01 AG033193NIA NIH HHS R01 AG054076NIA NIH HHS U01 AG049505NINDS NIH HHS R01 NS017950The Dunhill Medical Trust OSRP2/1006Wellcome Trust 095626
6 · The paper itself

Abstract

objectiveTo investigate the influence of common and low-frequency genetic variants on the risk of ischemic stroke (all IS) and etiologic stroke subtypes.

methodsWe meta-analyzed 12 individual genome-wide association studies comprising 10,307 cases and 19,326 controls imputed to the 1000 Genomes (1 KG) phase I reference panel. We selected variants showing the highest degree of association (p < 1E-5) in the discovery phase for replication in Caucasian (13,435 cases and 29,269 controls) and South Asian (2,385 cases and 5,193 controls) samples followed by a transethnic meta-analysis. We further investigated the p value distribution for different bins of allele frequencies for all IS and stroke subtypes.

resultsWe showed genome-wide significance for 4 loci: ABO for all IS, HDAC9 for large vessel disease (LVD), and both PITX2 and ZFHX3 for cardioembolic stroke (CE). We further refined the association peaks for ABO and PITX2. Analyzing different allele frequency bins, we showed significant enrichment in low-frequency variants (allele frequency <5%) for both LVD and small vessel disease, and an enrichment of higher frequency variants (allele frequency 10% and 30%) for CE (all p < 1E-5).

conclusionsOur findings suggest that the missing heritability in IS subtypes can in part be attributed to low-frequency and rare variants. Larger sample sizes are needed to identify the variants associated with all IS and stroke subtypes.

Indexed as

Cooperative BehaviorBrain IschemiaCase-Control StudiesGenetic VariationGenome-Wide Association StudyHumansPolymorphism, Single NucleotideStroke

Identifiers

PMID26935894
PMCPMC4818561

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.