ArticleScientific reports2016
Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
21 citing papers in PubMed.
- Regulatory Effects of Mepiquat Chloride on Root-Shoot Biomass Accumulation and Physiological Homeostasis in Different Soybean Varieties Under Drought Stress.Plants (Basel, Switzerland) · 2026Article
- Banana breeding by genome design.Journal of integrative plant biology · 2025Review
- Genome-Wide Identification and Expression Analysis ofPlants (Basel, Switzerland) · 2024Article
- Transcriptome Profiling during Sequential Stages of Cryopreservation in Banana (Plants (Basel, Switzerland) · 2023Article
- Review
- Whole genome doubling-induced the enrichment of H3K27me3 in genes carrying specific TEs inFrontiers in genetics · 2023Article
- The banana genome hub: a community database for genomics in the Musaceae.Horticulture research · 2022Article
- Impacts of the Biocontrol StrainFrontiers in microbiology · 2022Article
- Comparative Transcriptome and Expression Profiling of Resistant and Susceptible Banana Cultivars during Infection byInternational journal of molecular sciences · 2021Article
- Validation of reference genes for quantitative gene expression in the Lippia alba polyploid complex (Verbenaceae).Molecular biology reports · 2021Article
- Root Proteomic Analysis of Two Grapevine Rootstock Genotypes Showing Different Susceptibility to Salt Stress.International journal of molecular sciences · 2020Article
- Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006.BMC genomics · 2019Article
- Effect of paleopolyploidy and allopolyploidy on gene expression in banana.BMC genomics · 2019Article
- Transcriptional profiling and genes involved in acquired thermotolerance in Banana: a non-model crop.Scientific reports · 2018Article
- The Plantain Proteome, a Focus on Allele Specific Proteins Obtained from Plantain Fruits.Proteomics · 2018Article
- Homeolog expression analysis in an allotriploid non-model crop via integration of transcriptomics and proteomics.Scientific reports · 2018Article
- Article
- Genotype-Specific Growth and Proteomic Responses of Maize Toward Salt Stress.Frontiers in plant science · 2018Article
- Regulation of gene expression in roots of the pH-sensitive Vaccinium corymbosum and the pH-tolerant Vaccinium arboreum in response to near neutral pH stress using RNA-Seq.BMC genomics · 2017Article
- Comparative physiological and transcriptomic analyses provide integrated insight into osmotic, cold, and salt stress tolerance mechanisms in banana.Scientific reports · 2017Article
Corrections and comments
- Erratum issued
Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To explore the transcriptomic global response to osmotic stress in roots, 18 mRNA-seq libraries were generated from three triploid banana genotypes grown under mild osmotic stress (5% PEG) and control conditions. Illumina sequencing produced 568 million high quality reads, of which 70-84% were mapped to the banana diploid reference genome. Using different uni- and multivariate statistics, 92 genes were commonly identified as differentially expressed in the three genotypes. Using our in house workflow to analyze GO enriched and underlying biochemical pathways, we present the general processes affected by mild osmotic stress in the root and focus subsequently on the most significantly overrepresented classes associated with: respiration, glycolysis and fermentation. We hypothesize that in fast growing and oxygen demanding tissues, mild osmotic stress leads to a lower energy level, which induces a metabolic shift towards (i) a higher oxidative respiration, (ii) alternative respiration and (iii) fermentation. To confirm the mRNA-seq results, a subset of twenty up-regulated transcripts were further analysed by RT-qPCR in an independent experiment at three different time points. The identification and annotation of this set of genes provides a valuable resource to understand the importance of energy sensing during mild osmotic stress.
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