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ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2016

Map-based cloning, identification and characterization of the w gene controlling white immature fruit color in cucumber (Cucumis sativus L.).

Hanqiang Liu, Jianqing Jiao, Xinjing Liang, Jia Liu, Huanwen Meng, Shuxia Chen, Yuhong Li, Zhihui Cheng

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
  2. Transposon-mediated structural haplotypes at CsMYB60 are associated with peel coloration in cucumber.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
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  4. Identification and characterization ofHorticulture research · 2026
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  5. Map-based cloning and functional validation of ClChlH governing yellow rind color in watermelon (Citrullus lanatus).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
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  7. Development and application of functional markers based on theMolecular breeding : new strategies in plant improvement · 2025
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  8. A melon (bioRxiv : the preprint server for biology · 2025
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  9. Article
  10. Regreening mechanisms in cucumber: insights from a CsSIG2 mutation affecting chloroplast development.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  11. Mapping and functional characterization of the golden fruit 1 (gf1) in melon (Cucumis melo L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  14. Article
  15. Article
  16. Article
  17. Map-based cloning revealsMolecular breeding : new strategies in plant improvement · 2024
    Article
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hanqiang LiuCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Jianqing JiaoCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Xinjing LiangCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Jia LiuCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Huanwen MengCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Shuxia ChenCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Yuhong LiCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China.
Zhihui ChengCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, China. chengzh@nwsuaf.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageA single-nucleotide insertion resulted in a premature stop codon that is responsible for white immature fruit color in cucumber. Despite our previous progress in the mapping of the gene controlling white color in immature cucumber fruit and the identification of candidate genes, the specific gene that governs chlorophyll metabolism and its regulatory mechanism remains unknown. Here, we generated a mapping population consisting of 9497 F2 plants to delimit the controlling gene to an 8.2-kb physical interval that defines a sole candidate gene, APRR2. Sequencing the full-length DNA and cDNA of APRR2 allowed for identification of an allele, aprr2, encoding a truncated 101-amino acid protein due to a frameshift mutation and a premature stop codon. Gene structure prediction indicated that these 101 residues are located in a domain necessary for the function of the protein. The expression patterns of APRR2 were entirely consistent with the visual changes in green color intensity during fruit development. A microscopic observation of the fruit pericarp revealed fewer chloroplasts and a lower chloroplast chlorophyll storage capacity in Q24 (white) than in Q30 (green). A single-base insertion in the white color gene w, which leads to a premature stop codon, is hypothesized to have disabled the function of this gene in chlorophyll accumulation and chloroplast development. These findings contribute to basic research and the genetic improvement of fruit color.

Indexed as

Genes, PlantAllelesAmino Acid SequenceBase SequenceChlorophyllChloroplastsChromosome MappingCloning, MolecularCodon, NonsenseCucumis sativusDNA, PlantFrameshift MutationFruitGene Expression Regulation, PlantPhylogenyPigmentationChlorophyllCodon, NonsenseDNA, PlantPlant Proteins

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.