Evidence map›Paper›PMID 26934441›Full record

ArticleOncotarget2016

Comprehensive genetic testing identifies targetable genomic alterations in most patients with non-small cell lung cancer, specifically adenocarcinoma, single institute investigation.

Janani Vigneswaran, Yi-Hung Carol Tan, Septimiu D Murgu, Brian M Won, Kathryn Alexa Patton, Victoria M Villaflor, Philip C Hoffman, Thomas Hensing, D Kyle Hogarth, Renuka Malik and 9 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Himalayan flora: targeting various molecular pathways in lung cancer.Medical oncology (Northwood, London, England) · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Progress in Research on the Role of Flavonoids in Lung Cancer.International journal of molecular sciences · 2019
    Review
  8. Utility of Genomic Assessment of Blood-Derived Circulating Tumor DNA (ctDNA) in Patients with Advanced Lung Adenocarcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Article
  9. Article
  10. Article
  11. Tumor Heterogeneity and Therapeutic Resistance.American Society of Clinical Oncology educational book. American Society of Clinical Oncology. Annual Meeting · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 1 country.

Janani VigneswaranAlpert Medical School, Brown University, Providence, RI, USA.
Yi-Hung Carol TanSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL, USA.
Septimiu D MurguSection of Pulmonary and Critical Care Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA.
Brian M WonSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL, USA.
Kathryn Alexa PattonThe Dartmouth Institute for Health Policy and Clinical Practice, Lebanon, NH, USA.
Victoria M VillaflorSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL, USA.
Philip C HoffmanSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL, USA.
Thomas HensingSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL, USA.
D Kyle HogarthSection of Pulmonary and Critical Care Medicine, Department of Medicine, The University of Chicago, Chicago, IL, USA.
Renuka MalikDepartment of Radiation and Cellular Oncology, The University of Chicago, Chicago, IL, USA.
Heber MacMahonDepartment of Radiology, The University of Chicago, The University of Chicago, Chicago, IL, USA.
Jeffrey MuellerDepartment of Pathology, The University of Chicago, Chicago, IL, USA.
Cassie A SimonCancer Registry, Comprehensive Cancer Center, The University of Chicago, Chicago, IL, USA.
Wickii T VigneswaranDepartment of Surgery, The University of Chicago Medicine and Biologic Sciences, Chicago, IL, USA.
Christopher H WigfieldDepartment of Surgery, The University of Chicago Medicine and Biologic Sciences, Chicago, IL, USA.
Mark K FergusonDepartment of Surgery, The University of Chicago Medicine and Biologic Sciences, Chicago, IL, USA.
Aliya N HusainDepartment of Pathology, The University of Chicago, Chicago, IL, USA.
Everett E VokesSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL, USA.
Ravi SalgiaDepartment of Medical Oncology and Therapeutics Research, City of Hope, Duarte, CA, USA.
University of Chicago · USBrown University · USCity of Hope · USDartmouth Institute for Health Policy and Clinical Practice · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study reviews extensive genetic analysis in advanced non-small cell lung cancer (NSCLC) patients in order to: describe how targetable mutation genes interrelate with the genes identified as variants of unknown significance; assess the percentage of patients with a potentially targetable genetic alterations; evaluate the percentage of patients who had concurrent alterations, previously considered to be mutually exclusive; and characterize the molecular subset of KRAS. Thoracic Oncology Research Program Databases at the University of Chicago provided patient demographics, pathology, and results of genetic testing. 364 patients including 289 adenocarcinoma underwent genotype testing by various platforms such as FoundationOne, Caris Molecular Intelligence, and Response Genetics Inc. For the entire adenocarcinoma cohort, 25% of patients were African Americans; 90% of KRAS mutations were detected in smokers, including current and former smokers; 46% of EGFR and 61% of ALK alterations were detected in never smokers. 99.4% of patients, whose samples were analyzed by next-generation sequencing (NGS), had genetic alterations identified with an average of 10.8 alterations/tumor throughout different tumor subtypes. However, mutations were not mutually exclusive. NGS in this study identified potentially targetable genetic alterations in the majority of patients tested, detected concurrent alterations and provided information on variants of unknown significance at this time but potentially targetable in the future.

Indexed as

AdenocarcinomaAdenocarcinoma of LungAgedCarcinoma, Non-Small-Cell LungFemaleGenetic TestingGenomicsHumansLung NeoplasmsMaleMiddle AgedMutationPrecision Medicinegenetic testinggenomic alterationnext-generation sequencingnon-small cell lung cancer

Identifiers

PMID26934441
PMCPMC4951336
OpenAlexW2293241085

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.