Evidence map›Paper›PMID 26933666›Full record

ArticleOpen forum infectious diseases2016

A Genomic Signature of Influenza Infection Shows Potential for Presymptomatic Detection, Guiding Early Therapy, and Monitoring Clinical Responses.

Micah T McClain, Bradly P Nicholson, Lawrence P Park, Tzu-Yu Liu, Alfred O Hero, Ephraim L Tsalik, Aimee K Zaas, Timothy Veldman, Lori L Hudson, Robert Lambkin-Williams and 5 more

Open access · goldAbstract read
In one paragraph

Article in Open forum infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Clinical metagenomics.Nature reviews. Genetics · 2019
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Advancing Diagnostics to Address Antibacterial Resistance: The Diagnostics and Devices Committee of the Antibacterial Resistance Leadership Group.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2017
    Review
  18. Article
  19. Article
  20. Transcriptomics in Human Challenge Models.Frontiers in immunology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Micah T McClainCenter for Applied Genomics and Precision Medicine, Duke University; Durham Veterans Affairs Medical Center; Division of Infectious Diseases, Duke University Medical Center, Durham, North Carolina.
Bradly P NicholsonDurham Veterans Affairs Medical Center.
Lawrence P ParkDurham Veterans Affairs Medical Center; Division of Infectious Diseases, Duke University Medical Center, Durham, North Carolina.
Tzu-Yu LiuDepartment of Electrical Engineering and Computer Sciences, University of California, Berkeley; National Center for Genome Resources, Santa Fe, New Mexico.
Alfred O HeroCenter for Computational Biology and Bioinformatics , University of Michigan , Ann Arbor.
Ephraim L TsalikCenter for Applied Genomics and Precision Medicine, Duke University; Durham Veterans Affairs Medical Center; Division of Infectious Diseases, Duke University Medical Center, Durham, North Carolina.
Aimee K ZaasCenter for Applied Genomics and Precision Medicine, Duke University; Division of Infectious Diseases, Duke University Medical Center, Durham, North Carolina.
Timothy VeldmanCenter for Applied Genomics and Precision Medicine , Duke University.
Lori L HudsonCenter for Applied Genomics and Precision Medicine , Duke University.
Robert Lambkin-WilliamshVIVO , London , United Kingdom.
Anthony GilberthVIVO , London , United Kingdom.
Thomas BurkeCenter for Applied Genomics and Precision Medicine , Duke University.
Marshall NicholsCenter for Applied Genomics and Precision Medicine , Duke University.
Geoffrey S GinsburgCenter for Applied Genomics and Precision Medicine , Duke University.
Christopher W WoodsCenter for Applied Genomics and Precision Medicine, Duke University; Durham Veterans Affairs Medical Center; Division of Infectious Diseases, Duke University Medical Center, Durham, North Carolina.
Duke Medical Center · USDurham VA Medical Center · UShVIVO (United Kingdom) · GBNational Center for Genome Resources · USUniversity of Michigan–Ann Arbor · US

Funding

Resource Core 3 - Metabolomics CoreP30AG028716 · NIA · DUKE UNIVERSITY · PI Virginia B Kraus · 2006 to 2026
$24.6M
Genomic signatures for detection of upper respiratory viral infectionsIK2CX000611 · VA · DURHAM VA MEDICAL CENTER · PI MCCLAIN, MICAH T. · 2013 to 2016
–
CSRD VA IK2 CX000611NIA NIH HHS P30 AG028716
6 · The paper itself

Abstract

Early, presymptomatic intervention with oseltamivir (corresponding to the onset of a published host-based genomic signature of influenza infection) resulted in decreased overall influenza symptoms (aggregate symptom scores of 23.5 vs 46.3), more rapid resolution of clinical disease (20 hours earlier), reduced viral shedding (total median tissue culture infectious dose [TCID50] 7.4 vs 9.7), and significantly reduced expression of several inflammatory cytokines (interferon-γ, tumor necrosis factor-α, interleukin-6, and others). The host genomic response to influenza infection is robust and may provide the means for early detection, more timely therapeutic interventions, a meaningful reduction in clinical disease, and an effective molecular means to track response to therapy.

Indexed as

gene expressiongenomicinfluenzaoseltamivir

Identifiers

PMID26933666
PMCPMC4771939
OpenAlexW2256139303

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.