Evidence map›Paper›PMID 26931553›Full record

ArticleEpidemiology and infection2016

Determination of the complete genome and functional analysis of HPV6 isolate VBD19/10 from a patient with aggressive recurrent respiratory papillomatosis.

R Y Seedat, C E Combrinck, P A Bester, J-Y Lee, F J Burt

Abstract read
In one paragraph

Article in Epidemiology and infection, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. HPV Infections-Classification, Pathogenesis, and Potential New Therapies.International journal of molecular sciences · 2024
    Review
  3. Analysis of Human Papillomavirus (HPV) 16 Variants Associated with Cervical Infection in Italian Women.International journal of environmental research and public health · 2020
    Article
  4. Review
  5. Article
  6. Clinical features and surgical treatment for Chinese juvenile onset current respiratory papillomatosis (JORRP).European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

R Y SeedatDepartment of Otorhinolaryngology,School of Medicine,Faculty of Health Sciences,University of the Free State,Bloemfontein,South Africa.
C E CombrinckDepartment of Medical Microbiology and Virology,School of Medicine,Faculty of Health Sciences,University of the Free State,Bloemfontein,South Africa.
P A BesterDepartment of Medical Microbiology and Virology,School of Medicine,Faculty of Health Sciences,University of the Free State,Bloemfontein,South Africa.
J-Y LeeDepartment of Medical Microbiology and Virology,School of Medicine,Faculty of Health Sciences,University of the Free State,Bloemfontein,South Africa.
F J BurtDepartment of Medical Microbiology and Virology,School of Medicine,Faculty of Health Sciences,University of the Free State,Bloemfontein,South Africa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human papillomavirus (HPV) types 6 and 11 are the aetiological agent of recurrent respiratory papillomatosis (RRP). The complete genome of an HPV6 isolate with a 170 base pair (bp) duplication identified within the long control region (LCR) from a patient with aggressive recurrent respiratory papillomatosis was determined. The promoter sequence from the HPV LCR including the 170 bp duplication was placed upstream of a heterologous reporter gene and the activity of the reporter gene product determined using transfected cells. In total, mutations were observed at 157 nucleotide positions of the complete genome and included nucleotide substitutions, deletions and insertions, resulting in amino acid changes at 43 residue positions. Reporter gene activity using an HPV-derived LCR region with a 170 bp duplication was significantly higher than that using an HPV-derived LCR region with no duplication within this region. The results suggest that novel HPV variants warrant further investigation for potential biomarkers of aggressive disease.

Indexed as

Genome, ViralAmino Acid SubstitutionBase SequenceChildHuman papillomavirus 6HumansPapillomavirus InfectionsRespiratory Tract InfectionsHuman papillomavirusrecurrent respiratory papillomatosis (RRP)

Identifiers

PMID26931553
PMCPMC9150573

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.