ArticlePloS one2016
Salt-Responsive Transcriptome Profiling of Suaeda glauca via RNA Sequencing.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 62 citations in OpenAlex.
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- Identification and selection of reference genes for analysis of gene expression by quantitative real-time PCR in the euhalophyteCommunicative & integrative biology · 2024Article
- Analysis on the salt tolerance of Nitraria sibirica Pall. based on Pacbio full-length transcriptome sequencing.Plant cell reports · 2023Article
- Transcriptome Analysis of the Salt-TreatedCurrent issues in molecular biology · 2023Article
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- Physiological and transcriptomic analysis of salt tolerantFrontiers in plant science · 2023Article
- Genes Associated with Biological Nitrogen Fixation Efficiency Identified Using RNA Sequencing in Red Clover (Life (Basel, Switzerland) · 2022Article
- Transcriptome Analysis Reveals Genes and Pathways Associated with Salt Tolerance during Seed Germination inInternational journal of molecular sciences · 2022Article
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- Transcriptomic Profile Analysis ofGenes · 2022Article
- Profiles ofJournal of microbiology and biotechnology · 2021Article
- Identification and selection of reference genes for gene expression analysis by quantitative real-time PCR in Suaeda glauca's response to salinity.Scientific reports · 2021Article
- Article
- Transcriptomic profile analysis of the halophyte Suaeda rigida response and tolerance under NaCl stress.Scientific reports · 2020Article
- Studies on genome size estimation, chromosome number, gametophyte development and plant morphology of salt-tolerant halophyte Suaeda salsa.BMC plant biology · 2019Article
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- Combined Boron Toxicity and Salinity Stress-An Insight into Its Interaction in Plants.Plants (Basel, Switzerland) · 2019Review
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSuaeda glauca, a succulent halophyte of the Chenopodiaceae family, is widely distributed in coastal areas of China. Suaeda glauca is highly resistant to salt and alkali stresses. In the present study, the salt-responsive transcriptome of Suaeda glauca was analyzed to identify genes involved in salt tolerance and study halophilic mechanisms in this halophyte.
resultsIllumina HiSeq 2500 was used to sequence cDNA libraries from salt-treated and control samples with three replicates each treatment. De novo assembly of the six transcriptomes identified 75,445 unigenes. A total of 23,901 (31.68%) unigenes were annotated. Compared with transcriptomes from the three salt-treated and three salt-free samples, 231 differentially expressed genes (DEGs) were detected (including 130 up-regulated genes and 101 down-regulated genes), and 195 unigenes were functionally annotated. Based on the Gene Ontology (GO), Clusters of Orthologous Groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) classifications of the DEGs, more attention should be paid to transcripts associated with signal transduction, transporters, the cell wall and growth, defense metabolism and transcription factors involved in salt tolerance.
conclusionsThis report provides a genome-wide transcriptional analysis of a halophyte, Suaeda glauca, under salt stress. Further studies of the genetic basis of salt tolerance in halophytes are warranted.
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